Hb_027522_020

Information

Type -
Description -
Location Contig27522: 8534-11955
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027522_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_005352_010 0.0550958379 - - -
3 Hb_022599_010 0.0683814382 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
4 Hb_062317_010 0.0970610314 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003915_030 0.1305197788 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
6 Hb_006778_010 0.1436755042 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
7 Hb_001255_070 0.1626663037 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_003908_010 0.162667585 - - polyprotein [Oryza australiensis]
9 Hb_000917_020 0.1626680678 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_007524_040 0.1626689801 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
11 Hb_005300_050 0.1626690058 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_005352_020 0.1627772965 - - -
13 Hb_049490_010 0.1631859875 - - hypothetical protein VITISV_013805 [Vitis vinifera]
14 Hb_055002_010 0.1635028692 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
15 Hb_127361_010 0.1641233762 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_080126_010 0.1641682818 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
17 Hb_003898_010 0.1647363635 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_010523_020 0.1648312878 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002281_060 0.1652044101 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
20 Hb_001115_060 0.1653632897 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]

Gene co-expression network

sample Hb_027522_020 Hb_027522_020 Hb_005352_010 Hb_005352_010 Hb_027522_020--Hb_005352_010 Hb_022599_010 Hb_022599_010 Hb_027522_020--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_027522_020--Hb_062317_010 Hb_003915_030 Hb_003915_030 Hb_027522_020--Hb_003915_030 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_005352_010--Hb_022599_010 Hb_005352_010--Hb_062317_010 Hb_123951_010 Hb_123951_010 Hb_005352_010--Hb_123951_010 Hb_005352_010--Hb_003915_030 Hb_004762_020 Hb_004762_020 Hb_005352_010--Hb_004762_020 Hb_022599_010--Hb_062317_010 Hb_022599_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_022599_010--Hb_005405_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_110426_010 Hb_110426_010 Hb_062317_010--Hb_110426_010 Hb_000723_150 Hb_000723_150 Hb_062317_010--Hb_000723_150 Hb_002375_100 Hb_002375_100 Hb_062317_010--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_062317_010--Hb_001172_110 Hb_006040_010 Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020 Hb_000585_090 Hb_000585_090 Hb_006778_010--Hb_000585_090 Hb_164415_010 Hb_164415_010 Hb_006778_010--Hb_164415_010 Hb_006778_010--Hb_003915_030 Hb_004987_050 Hb_004987_050 Hb_006778_010--Hb_004987_050 Hb_000764_050 Hb_000764_050 Hb_006778_010--Hb_000764_050 Hb_000917_020 Hb_000917_020 Hb_001255_070--Hb_000917_020 Hb_003908_010 Hb_003908_010 Hb_001255_070--Hb_003908_010 Hb_007524_040 Hb_007524_040 Hb_001255_070--Hb_007524_040 Hb_005300_050 Hb_005300_050 Hb_001255_070--Hb_005300_050 Hb_005352_020 Hb_005352_020 Hb_001255_070--Hb_005352_020 Hb_049490_010 Hb_049490_010 Hb_001255_070--Hb_049490_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00530795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00429957 0.0926213

CAGE analysis