Hb_123951_010

Information

Type -
Description -
Location Contig123951: 8897-12023
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID P15629
description Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123951_010 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_188450_010 0.0851114941 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_009042_010 0.0851927371 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000599_070 0.0890799732 - - PREDICTED: patellin-4-like [Jatropha curcas]
5 Hb_153665_010 0.1012547543 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
6 Hb_004762_020 0.1377108231 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005352_010 0.1401190241 - - -
8 Hb_005405_010 0.145867435 - - -
9 Hb_022599_010 0.1733266782 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
10 Hb_009888_010 0.1851624674 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_027522_020 0.1859385241 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_014115_020 0.1896405569 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_099058_020 0.1896409737 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_016671_020 0.1896414494 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_003239_030 0.1896491148 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_002628_030 0.1896550194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_008898_010 0.1896570727 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_086455_010 0.189671548 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
19 Hb_115505_010 0.1896728338 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_005472_010 0.1896884577 - - -

Gene co-expression network

sample Hb_123951_010 Hb_123951_010 Hb_188450_010 Hb_188450_010 Hb_123951_010--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_123951_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_123951_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_123951_010--Hb_153665_010 Hb_004762_020 Hb_004762_020 Hb_123951_010--Hb_004762_020 Hb_005352_010 Hb_005352_010 Hb_123951_010--Hb_005352_010 Hb_188450_010--Hb_009042_010 Hb_188450_010--Hb_000599_070 Hb_188450_010--Hb_153665_010 Hb_188450_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_188450_010--Hb_005405_010 Hb_009042_010--Hb_000599_070 Hb_009042_010--Hb_153665_010 Hb_009042_010--Hb_004762_020 Hb_009042_010--Hb_005405_010 Hb_000599_070--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_000599_070--Hb_030370_010 Hb_000599_070--Hb_004762_020 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_153665_010--Hb_030370_010 Hb_004762_020--Hb_005405_010 Hb_022599_010 Hb_022599_010 Hb_004762_020--Hb_022599_010 Hb_004762_020--Hb_030370_010 Hb_027522_020 Hb_027522_020 Hb_005352_010--Hb_027522_020 Hb_005352_010--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_005352_010--Hb_062317_010 Hb_003915_030 Hb_003915_030 Hb_005352_010--Hb_003915_030 Hb_005352_010--Hb_004762_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.013906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00543777 0.0582387

CAGE analysis