Hb_004762_020

Information

Type -
Description -
Location Contig4762: 1731-6381
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0043231
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004762_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_005405_010 0.0094682534 - - -
3 Hb_188450_010 0.0934191584 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_009042_010 0.0943010227 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000599_070 0.1139888214 - - PREDICTED: patellin-4-like [Jatropha curcas]
6 Hb_022599_010 0.1140878052 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
7 Hb_030370_010 0.1373882126 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
8 Hb_123951_010 0.1377108231 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
9 Hb_153665_010 0.1433660706 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
10 Hb_062317_010 0.1458094495 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005352_010 0.1614181001 - - -
12 Hb_000418_160 0.1615433234 - - -
13 Hb_027522_020 0.1715868091 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001799_220 0.1983645677 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
15 Hb_000811_090 0.2054699853 - - hypothetical protein VITISV_043745 [Vitis vinifera]
16 Hb_002123_030 0.2086616113 - - hypothetical protein VITISV_003767 [Vitis vinifera]
17 Hb_000421_280 0.2127518064 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_002072_050 0.2141136264 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
19 Hb_009888_010 0.2142146233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_012253_020 0.2155549592 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004762_020 Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_004762_020--Hb_005405_010 Hb_188450_010 Hb_188450_010 Hb_004762_020--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_004762_020--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_004762_020--Hb_000599_070 Hb_022599_010 Hb_022599_010 Hb_004762_020--Hb_022599_010 Hb_030370_010 Hb_030370_010 Hb_004762_020--Hb_030370_010 Hb_005405_010--Hb_188450_010 Hb_005405_010--Hb_009042_010 Hb_005405_010--Hb_000599_070 Hb_005405_010--Hb_022599_010 Hb_005405_010--Hb_030370_010 Hb_188450_010--Hb_009042_010 Hb_188450_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_188450_010--Hb_153665_010 Hb_123951_010 Hb_123951_010 Hb_188450_010--Hb_123951_010 Hb_009042_010--Hb_000599_070 Hb_009042_010--Hb_153665_010 Hb_009042_010--Hb_123951_010 Hb_000599_070--Hb_153665_010 Hb_000599_070--Hb_123951_010 Hb_000599_070--Hb_030370_010 Hb_062317_010 Hb_062317_010 Hb_022599_010--Hb_062317_010 Hb_027522_020 Hb_027522_020 Hb_022599_010--Hb_027522_020 Hb_005352_010 Hb_005352_010 Hb_022599_010--Hb_005352_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_002123_030 Hb_002123_030 Hb_030370_010--Hb_002123_030 Hb_001799_220 Hb_001799_220 Hb_030370_010--Hb_001799_220 Hb_012253_020 Hb_012253_020 Hb_030370_010--Hb_012253_020 Hb_030370_010--Hb_009042_010 Hb_030370_010--Hb_188450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00630722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00959881 0.0515655

CAGE analysis