Hb_002123_030

Information

Type -
Description -
Location Contig2123: 53354-53770
Sequence    

Annotation

kegg
ID cam:101493481
description uncharacterized LOC101493481
nr
ID CAN75325.1
description hypothetical protein VITISV_003767 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C5E1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003767 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_003767

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002123_030 0.0 - - hypothetical protein VITISV_003767 [Vitis vinifera]
2 Hb_012253_020 0.0637721364 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_030370_010 0.0763165716 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
4 Hb_001799_220 0.0992752185 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
5 Hb_153665_010 0.1376796294 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
6 Hb_000599_070 0.1478898875 - - PREDICTED: patellin-4-like [Jatropha curcas]
7 Hb_009042_010 0.1583556439 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_188450_010 0.1588875524 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005405_010 0.2051599887 - - -
10 Hb_004762_020 0.2086616113 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_123951_010 0.2334513711 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
12 Hb_014988_030 0.2384407839 - - hypothetical protein VITISV_006810 [Vitis vinifera]
13 Hb_133191_010 0.2440428703 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
14 Hb_001511_230 0.2502952914 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
15 Hb_000832_350 0.2518883531 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_001496_140 0.2642406559 - - -
17 Hb_008727_130 0.264478794 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
18 Hb_002025_090 0.2665910231 - - unnamed protein product [Coffea canephora]
19 Hb_004041_010 0.275192515 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002090_010 0.2837993082 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]

Gene co-expression network

sample Hb_002123_030 Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_002123_030--Hb_012253_020 Hb_030370_010 Hb_030370_010 Hb_002123_030--Hb_030370_010 Hb_001799_220 Hb_001799_220 Hb_002123_030--Hb_001799_220 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_002123_030--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_002123_030--Hb_009042_010 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_030370_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_030370_010--Hb_001799_220 Hb_030370_010--Hb_000599_070 Hb_030370_010--Hb_009042_010 Hb_030370_010--Hb_188450_010 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000832_350 Hb_000832_350 Hb_001799_220--Hb_000832_350 Hb_001799_220--Hb_000599_070 Hb_153665_010--Hb_000599_070 Hb_153665_010--Hb_009042_010 Hb_153665_010--Hb_188450_010 Hb_123951_010 Hb_123951_010 Hb_153665_010--Hb_123951_010 Hb_153665_010--Hb_030370_010 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_123951_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020 Hb_009042_010--Hb_188450_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_009042_010--Hb_005405_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.20483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.246127 0.51554

CAGE analysis