Hb_153665_010

Information

Type -
Description -
Location Contig153665: 74-973
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_009799959.1
description PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153665_010 0.0 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
2 Hb_000599_070 0.0301853398 - - PREDICTED: patellin-4-like [Jatropha curcas]
3 Hb_009042_010 0.0506217166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_188450_010 0.0515451152 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_123951_010 0.1012547543 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
6 Hb_012253_020 0.1033121894 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_030370_010 0.1176809231 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
8 Hb_002123_030 0.1376796294 - - hypothetical protein VITISV_003767 [Vitis vinifera]
9 Hb_004762_020 0.1433660706 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_005405_010 0.1465096964 - - -
11 Hb_001799_220 0.1985883936 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
12 Hb_005352_010 0.2283038894 - - -
13 Hb_022599_010 0.2307994021 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
14 Hb_009888_010 0.24502065 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000418_160 0.2538198453 - - -
16 Hb_014988_030 0.2538983223 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_002072_050 0.2541538292 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
18 Hb_006237_030 0.2542600424 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000421_280 0.2547861719 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_004041_010 0.262324615 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_153665_010 Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_153665_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_153665_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_153665_010--Hb_188450_010 Hb_123951_010 Hb_123951_010 Hb_153665_010--Hb_123951_010 Hb_012253_020 Hb_012253_020 Hb_153665_010--Hb_012253_020 Hb_030370_010 Hb_030370_010 Hb_153665_010--Hb_030370_010 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_123951_010 Hb_000599_070--Hb_030370_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020 Hb_009042_010--Hb_188450_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_009042_010--Hb_005405_010 Hb_188450_010--Hb_123951_010 Hb_188450_010--Hb_004762_020 Hb_188450_010--Hb_005405_010 Hb_123951_010--Hb_004762_020 Hb_005352_010 Hb_005352_010 Hb_123951_010--Hb_005352_010 Hb_002123_030 Hb_002123_030 Hb_012253_020--Hb_002123_030 Hb_012253_020--Hb_030370_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_012253_020--Hb_188450_010 Hb_030370_010--Hb_002123_030 Hb_001799_220 Hb_001799_220 Hb_030370_010--Hb_001799_220 Hb_030370_010--Hb_009042_010 Hb_030370_010--Hb_188450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0329846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0203047 0.101246

CAGE analysis