Hb_012253_020

Information

Type -
Description -
Location Contig12253: 11901-16104
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012253_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002123_030 0.0637721364 - - hypothetical protein VITISV_003767 [Vitis vinifera]
3 Hb_153665_010 0.1033121894 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
4 Hb_030370_010 0.1101730446 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
5 Hb_000599_070 0.1247833875 - - PREDICTED: patellin-4-like [Jatropha curcas]
6 Hb_009042_010 0.1415240325 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_188450_010 0.142311056 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001799_220 0.1598640469 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
9 Hb_123951_010 0.2026813 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
10 Hb_005405_010 0.2146964148 - - -
11 Hb_004762_020 0.2155549592 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004041_010 0.2208431661 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014988_030 0.2269872982 - - hypothetical protein VITISV_006810 [Vitis vinifera]
14 Hb_133191_010 0.2402512892 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
15 Hb_008727_130 0.2548317162 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
16 Hb_001511_230 0.2663647141 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
17 Hb_002025_090 0.2792995988 - - unnamed protein product [Coffea canephora]
18 Hb_086993_010 0.2798689615 - - -
19 Hb_006237_030 0.2846885722 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_006674_020 0.2868490355 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_012253_020 Hb_012253_020 Hb_002123_030 Hb_002123_030 Hb_012253_020--Hb_002123_030 Hb_153665_010 Hb_153665_010 Hb_012253_020--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_012253_020--Hb_030370_010 Hb_000599_070 Hb_000599_070 Hb_012253_020--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_002123_030--Hb_030370_010 Hb_001799_220 Hb_001799_220 Hb_002123_030--Hb_001799_220 Hb_002123_030--Hb_153665_010 Hb_002123_030--Hb_000599_070 Hb_002123_030--Hb_009042_010 Hb_153665_010--Hb_000599_070 Hb_153665_010--Hb_009042_010 Hb_153665_010--Hb_188450_010 Hb_123951_010 Hb_123951_010 Hb_153665_010--Hb_123951_010 Hb_153665_010--Hb_030370_010 Hb_030370_010--Hb_001799_220 Hb_030370_010--Hb_000599_070 Hb_030370_010--Hb_009042_010 Hb_030370_010--Hb_188450_010 Hb_000599_070--Hb_009042_010 Hb_000599_070--Hb_188450_010 Hb_000599_070--Hb_123951_010 Hb_004762_020 Hb_004762_020 Hb_000599_070--Hb_004762_020 Hb_009042_010--Hb_188450_010 Hb_009042_010--Hb_123951_010 Hb_009042_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_009042_010--Hb_005405_010 Hb_188450_010--Hb_123951_010 Hb_188450_010--Hb_004762_020 Hb_188450_010--Hb_005405_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00896673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00693509 0.0187525

CAGE analysis