Hb_005352_010

Information

Type -
Description -
Location Contig5352: 37699-39465
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005352_010 0.0 - - -
2 Hb_027522_020 0.0550958379 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_022599_010 0.091303056 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
4 Hb_062317_010 0.137600771 - - conserved hypothetical protein [Ricinus communis]
5 Hb_123951_010 0.1401190241 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
6 Hb_003915_030 0.1577862561 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
7 Hb_004762_020 0.1614181001 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_009888_010 0.164392088 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000100_120 0.1669781365 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
10 Hb_005405_010 0.1696475996 - - -
11 Hb_006778_010 0.1710489541 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
12 Hb_005986_020 0.1842576693 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_000204_170 0.1855151923 - - integrase [Gossypium herbaceum]
14 Hb_005472_010 0.1865295649 - - -
15 Hb_115505_010 0.1870322758 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_008898_010 0.1876883106 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003239_030 0.1881483511 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_099058_020 0.1890139137 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_014115_020 0.189632154 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_188450_010 0.1897956888 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_005352_010 Hb_005352_010 Hb_027522_020 Hb_027522_020 Hb_005352_010--Hb_027522_020 Hb_022599_010 Hb_022599_010 Hb_005352_010--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_005352_010--Hb_062317_010 Hb_123951_010 Hb_123951_010 Hb_005352_010--Hb_123951_010 Hb_003915_030 Hb_003915_030 Hb_005352_010--Hb_003915_030 Hb_004762_020 Hb_004762_020 Hb_005352_010--Hb_004762_020 Hb_027522_020--Hb_022599_010 Hb_027522_020--Hb_062317_010 Hb_027522_020--Hb_003915_030 Hb_006778_010 Hb_006778_010 Hb_027522_020--Hb_006778_010 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_022599_010--Hb_062317_010 Hb_022599_010--Hb_004762_020 Hb_005405_010 Hb_005405_010 Hb_022599_010--Hb_005405_010 Hb_002396_010 Hb_002396_010 Hb_022599_010--Hb_002396_010 Hb_110426_010 Hb_110426_010 Hb_062317_010--Hb_110426_010 Hb_000723_150 Hb_000723_150 Hb_062317_010--Hb_000723_150 Hb_002375_100 Hb_002375_100 Hb_062317_010--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_062317_010--Hb_001172_110 Hb_188450_010 Hb_188450_010 Hb_123951_010--Hb_188450_010 Hb_009042_010 Hb_009042_010 Hb_123951_010--Hb_009042_010 Hb_000599_070 Hb_000599_070 Hb_123951_010--Hb_000599_070 Hb_153665_010 Hb_153665_010 Hb_123951_010--Hb_153665_010 Hb_123951_010--Hb_004762_020 Hb_006040_010 Hb_006040_010 Hb_003915_030--Hb_006040_010 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020 Hb_004762_020--Hb_005405_010 Hb_004762_020--Hb_188450_010 Hb_004762_020--Hb_009042_010 Hb_004762_020--Hb_000599_070 Hb_030370_010 Hb_030370_010 Hb_004762_020--Hb_030370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0850408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0384928 0.885196

CAGE analysis