Hb_145745_010

Information

Type -
Description -
Location Contig145745: 33345-34611
Sequence    

Annotation

kegg
ID egr:104416842
description TMV resistance protein N-like
nr
ID CDY63595.1
description BnaUnng00830D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078J910
description BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1
Gene Ontology
ID GO:0009579
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11839: 32364-32586 , PASA_asmbl_11840: 34272-34439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145745_010 0.0 - - BnaUnng00830D [Brassica napus]
2 Hb_004138_020 0.1200997597 - - PREDICTED: cucumisin-like [Populus euphratica]
3 Hb_001081_070 0.1216970804 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_003477_020 0.1243195921 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
5 Hb_009095_020 0.1291592117 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_141708_010 0.1293746948 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
7 Hb_006331_010 0.1312413593 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_026188_010 0.1315373699 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
9 Hb_007645_040 0.1320805065 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
10 Hb_003915_030 0.1360900665 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_176140_010 0.1371177999 - - polyprotein [Oryza australiensis]
12 Hb_001779_050 0.1371858418 - - polyprotein [Ananas comosus]
13 Hb_158575_010 0.1375394062 - - conserved hypothetical protein [Ricinus communis]
14 Hb_157680_010 0.1376032495 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
15 Hb_004453_120 0.1379440471 - - ammonium transporter, putative [Ricinus communis]
16 Hb_000648_150 0.1385273951 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
17 Hb_001338_010 0.1387058017 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
18 Hb_000031_070 0.1395688052 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
19 Hb_003882_030 0.1413856842 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_002874_250 0.1426532374 - - -

Gene co-expression network

sample Hb_145745_010 Hb_145745_010 Hb_004138_020 Hb_004138_020 Hb_145745_010--Hb_004138_020 Hb_001081_070 Hb_001081_070 Hb_145745_010--Hb_001081_070 Hb_003477_020 Hb_003477_020 Hb_145745_010--Hb_003477_020 Hb_009095_020 Hb_009095_020 Hb_145745_010--Hb_009095_020 Hb_141708_010 Hb_141708_010 Hb_145745_010--Hb_141708_010 Hb_006331_010 Hb_006331_010 Hb_145745_010--Hb_006331_010 Hb_004138_020--Hb_003477_020 Hb_007645_040 Hb_007645_040 Hb_004138_020--Hb_007645_040 Hb_004138_020--Hb_001081_070 Hb_004138_020--Hb_006331_010 Hb_034168_060 Hb_034168_060 Hb_004138_020--Hb_034168_060 Hb_083242_040 Hb_083242_040 Hb_004138_020--Hb_083242_040 Hb_001081_070--Hb_006331_010 Hb_002294_020 Hb_002294_020 Hb_001081_070--Hb_002294_020 Hb_001081_070--Hb_083242_040 Hb_001081_070--Hb_003477_020 Hb_001081_070--Hb_009095_020 Hb_003477_020--Hb_007645_040 Hb_005087_020 Hb_005087_020 Hb_003477_020--Hb_005087_020 Hb_000031_070 Hb_000031_070 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_009095_020--Hb_083242_040 Hb_026188_010 Hb_026188_010 Hb_009095_020--Hb_026188_010 Hb_001715_050 Hb_001715_050 Hb_009095_020--Hb_001715_050 Hb_001674_050 Hb_001674_050 Hb_141708_010--Hb_001674_050 Hb_001338_080 Hb_001338_080 Hb_141708_010--Hb_001338_080 Hb_182972_020 Hb_182972_020 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_006331_010--Hb_048694_010 Hb_006331_010--Hb_083242_040 Hb_006331_010--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.2495 8.32276 0.0831554 3.00931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.392042 115.193

CAGE analysis