Hb_003477_020

Information

Type desease resistance
Description Gene Name: AAA_29
Location Contig3477: 33106-33816
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb015959mg
description hypothetical protein
nr
ID XP_011033347.1
description PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
swissprot
ID Q9C8K2
description ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1
trembl
ID M5WDC9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb015959mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003477_020 0.0 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
2 Hb_004138_020 0.0346511552 - - PREDICTED: cucumisin-like [Populus euphratica]
3 Hb_007645_040 0.0538528061 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
4 Hb_005087_020 0.0570252804 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
5 Hb_000031_070 0.0594632138 - - Thioredoxin domain-containing protein, putative [Ricinus communis]
6 Hb_001338_010 0.0605469688 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
7 Hb_001779_050 0.0649925704 - - polyprotein [Ananas comosus]
8 Hb_176140_010 0.0654022295 - - polyprotein [Oryza australiensis]
9 Hb_054839_010 0.0705987195 - - PsbC, partial (chloroplast) [Asimina parviflora]
10 Hb_000388_020 0.0706384356 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
11 Hb_151061_040 0.0718988799 - - putative retrotransposon protein [Phyllostachys edulis]
12 Hb_001081_070 0.0747293814 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
13 Hb_158575_010 0.0793873222 - - conserved hypothetical protein [Ricinus communis]
14 Hb_157680_010 0.0797909099 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
15 Hb_004453_120 0.0817559243 - - ammonium transporter, putative [Ricinus communis]
16 Hb_006331_010 0.0847533795 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_003882_030 0.0951259895 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_125153_010 0.0970286903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
19 Hb_002874_250 0.0988838281 - - -
20 Hb_000010_230 0.1002898957 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_003477_020 Hb_003477_020 Hb_004138_020 Hb_004138_020 Hb_003477_020--Hb_004138_020 Hb_007645_040 Hb_007645_040 Hb_003477_020--Hb_007645_040 Hb_005087_020 Hb_005087_020 Hb_003477_020--Hb_005087_020 Hb_000031_070 Hb_000031_070 Hb_003477_020--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_003477_020--Hb_001338_010 Hb_001779_050 Hb_001779_050 Hb_003477_020--Hb_001779_050 Hb_004138_020--Hb_007645_040 Hb_001081_070 Hb_001081_070 Hb_004138_020--Hb_001081_070 Hb_006331_010 Hb_006331_010 Hb_004138_020--Hb_006331_010 Hb_034168_060 Hb_034168_060 Hb_004138_020--Hb_034168_060 Hb_083242_040 Hb_083242_040 Hb_004138_020--Hb_083242_040 Hb_000388_020 Hb_000388_020 Hb_007645_040--Hb_000388_020 Hb_007645_040--Hb_034168_060 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_054839_010 Hb_054839_010 Hb_007645_040--Hb_054839_010 Hb_151061_040 Hb_151061_040 Hb_005087_020--Hb_151061_040 Hb_005087_020--Hb_054839_010 Hb_005087_020--Hb_000388_020 Hb_005087_020--Hb_000031_070 Hb_125153_010 Hb_125153_010 Hb_005087_020--Hb_125153_010 Hb_000031_070--Hb_001338_010 Hb_000031_070--Hb_001779_050 Hb_176140_010 Hb_176140_010 Hb_000031_070--Hb_176140_010 Hb_158575_010 Hb_158575_010 Hb_000031_070--Hb_158575_010 Hb_157680_010 Hb_157680_010 Hb_000031_070--Hb_157680_010 Hb_004453_120 Hb_004453_120 Hb_000031_070--Hb_004453_120 Hb_001338_010--Hb_001779_050 Hb_001338_010--Hb_176140_010 Hb_001338_010--Hb_158575_010 Hb_001338_010--Hb_157680_010 Hb_001338_010--Hb_004453_120 Hb_001779_050--Hb_176140_010 Hb_001779_050--Hb_158575_010 Hb_001779_050--Hb_157680_010 Hb_001779_050--Hb_004453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.132675 0.891879 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 18.4857

CAGE analysis