Hb_000723_150

Information

Type -
Description -
Location Contig723: 167587-168408
Sequence    

Annotation

kegg
ID rcu:RCOM_1355110
description nitrate transporter, putative
nr
ID XP_012082415.1
description PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
swissprot
ID Q9FJH8
description High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1
trembl
ID B9S0I5
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1355110 PE=4 SV=1
Gene Ontology
ID GO:0016021
description high-affinity nitrate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_150 0.0 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
2 Hb_110426_010 0.0006466452 - - -
3 Hb_002375_100 0.0025061602 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
4 Hb_001172_110 0.0033907001 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
5 Hb_001307_230 0.0052316914 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
6 Hb_026317_020 0.0064721836 - - hypothetical protein VITISV_035911 [Vitis vinifera]
7 Hb_002874_220 0.0078376321 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
8 Hb_001782_090 0.0080472198 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
9 Hb_008562_020 0.0084525043 - - -
10 Hb_000905_010 0.0085130167 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
11 Hb_000777_010 0.0087788909 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
12 Hb_006599_040 0.0092661969 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004145_030 0.0093291561 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
14 Hb_174010_030 0.0095226374 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_002396_010 0.0098550436 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
16 Hb_001348_240 0.0100140332 - - Putative polyprotein, identical [Solanum demissum]
17 Hb_002342_010 0.0116378705 - - RALF-LIKE 27 family protein [Populus trichocarpa]
18 Hb_094256_010 0.0125857632 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_013420_030 0.0150137084 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003088_040 0.0197021647 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]

Gene co-expression network

sample Hb_000723_150 Hb_000723_150 Hb_110426_010 Hb_110426_010 Hb_000723_150--Hb_110426_010 Hb_002375_100 Hb_002375_100 Hb_000723_150--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_000723_150--Hb_001172_110 Hb_001307_230 Hb_001307_230 Hb_000723_150--Hb_001307_230 Hb_026317_020 Hb_026317_020 Hb_000723_150--Hb_026317_020 Hb_002874_220 Hb_002874_220 Hb_000723_150--Hb_002874_220 Hb_110426_010--Hb_002375_100 Hb_110426_010--Hb_001172_110 Hb_110426_010--Hb_001307_230 Hb_110426_010--Hb_026317_020 Hb_110426_010--Hb_002874_220 Hb_002375_100--Hb_001172_110 Hb_002375_100--Hb_001307_230 Hb_002375_100--Hb_026317_020 Hb_001782_090 Hb_001782_090 Hb_002375_100--Hb_001782_090 Hb_001172_110--Hb_001307_230 Hb_001172_110--Hb_026317_020 Hb_001172_110--Hb_001782_090 Hb_001307_230--Hb_026317_020 Hb_001307_230--Hb_001782_090 Hb_000905_010 Hb_000905_010 Hb_001307_230--Hb_000905_010 Hb_000777_010 Hb_000777_010 Hb_001307_230--Hb_000777_010 Hb_026317_020--Hb_001782_090 Hb_026317_020--Hb_000905_010 Hb_026317_020--Hb_000777_010 Hb_006599_040 Hb_006599_040 Hb_026317_020--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_026317_020--Hb_004145_030 Hb_008562_020 Hb_008562_020 Hb_002874_220--Hb_008562_020 Hb_002342_010 Hb_002342_010 Hb_002874_220--Hb_002342_010 Hb_094256_010 Hb_094256_010 Hb_002874_220--Hb_094256_010 Hb_013420_030 Hb_013420_030 Hb_002874_220--Hb_013420_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.020704 0.206094

CAGE analysis