Hb_001307_230

Information

Type -
Description -
Location Contig1307: 195892-198573
Sequence    

Annotation

kegg
ID rcu:RCOM_0998830
description hypothetical protein
nr
ID XP_012085849.1
description PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09117: 193828-195315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_230 0.0 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
2 Hb_026317_020 0.0012405677 - - hypothetical protein VITISV_035911 [Vitis vinifera]
3 Hb_001172_110 0.0018410495 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
4 Hb_002375_100 0.0027255948 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
5 Hb_001782_090 0.0028157424 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
6 Hb_000905_010 0.0032815896 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
7 Hb_000777_010 0.0035474943 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
8 Hb_006599_040 0.0040348599 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_004145_030 0.0040978272 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_174010_030 0.0042913336 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_002396_010 0.0046237848 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
12 Hb_001348_240 0.0047827967 - - Putative polyprotein, identical [Solanum demissum]
13 Hb_000723_150 0.0052316914 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
14 Hb_110426_010 0.0058783015 - - -
15 Hb_002874_220 0.0130683964 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
16 Hb_008562_020 0.0136831505 - - -
17 Hb_002342_010 0.0168678029 - - RALF-LIKE 27 family protein [Populus trichocarpa]
18 Hb_094256_010 0.0178154505 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_133913_010 0.0191385239 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_000288_050 0.0194426663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001307_230 Hb_001307_230 Hb_026317_020 Hb_026317_020 Hb_001307_230--Hb_026317_020 Hb_001172_110 Hb_001172_110 Hb_001307_230--Hb_001172_110 Hb_002375_100 Hb_002375_100 Hb_001307_230--Hb_002375_100 Hb_001782_090 Hb_001782_090 Hb_001307_230--Hb_001782_090 Hb_000905_010 Hb_000905_010 Hb_001307_230--Hb_000905_010 Hb_000777_010 Hb_000777_010 Hb_001307_230--Hb_000777_010 Hb_026317_020--Hb_001782_090 Hb_026317_020--Hb_000905_010 Hb_026317_020--Hb_000777_010 Hb_006599_040 Hb_006599_040 Hb_026317_020--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_026317_020--Hb_004145_030 Hb_001172_110--Hb_002375_100 Hb_001172_110--Hb_026317_020 Hb_000723_150 Hb_000723_150 Hb_001172_110--Hb_000723_150 Hb_110426_010 Hb_110426_010 Hb_001172_110--Hb_110426_010 Hb_001172_110--Hb_001782_090 Hb_002375_100--Hb_000723_150 Hb_002375_100--Hb_110426_010 Hb_002375_100--Hb_026317_020 Hb_002375_100--Hb_001782_090 Hb_001782_090--Hb_000905_010 Hb_001782_090--Hb_000777_010 Hb_001782_090--Hb_006599_040 Hb_001782_090--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_001782_090--Hb_174010_030 Hb_000905_010--Hb_000777_010 Hb_000905_010--Hb_006599_040 Hb_000905_010--Hb_004145_030 Hb_000905_010--Hb_174010_030 Hb_002396_010 Hb_002396_010 Hb_000905_010--Hb_002396_010 Hb_000777_010--Hb_006599_040 Hb_000777_010--Hb_004145_030 Hb_000777_010--Hb_174010_030 Hb_000777_010--Hb_002396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0115668 0.120217

CAGE analysis