Hb_001782_090

Information

Type -
Description -
Location Contig1782: 163988-167903
Sequence    

Annotation

kegg
ID vvi:100256928
description pentatricopeptide repeat-containing protein At1g62910-like
nr
ID XP_010660141.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
swissprot
ID Q9S7R4
description Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
trembl
ID F6HVL2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00120 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001782_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
2 Hb_000905_010 0.0004658551 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
3 Hb_000777_010 0.0007317654 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
4 Hb_006599_040 0.0012191431 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_004145_030 0.0012821121 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_174010_030 0.0014756242 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_026317_020 0.0015751848 - - hypothetical protein VITISV_035911 [Vitis vinifera]
8 Hb_002396_010 0.0018080861 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
9 Hb_001348_240 0.0019671034 - - Putative polyprotein, identical [Solanum demissum]
10 Hb_001307_230 0.0028157424 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
11 Hb_001172_110 0.0046567479 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_002375_100 0.0055412599 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
13 Hb_000723_150 0.0080472198 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
14 Hb_110426_010 0.0086937845 - - -
15 Hb_002874_220 0.0158831056 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
16 Hb_133913_010 0.0163244802 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_008562_020 0.0164977712 - - -
18 Hb_000288_050 0.0166286832 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001385_020 0.0171090144 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
20 Hb_002342_010 0.0196819097 - - RALF-LIKE 27 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001782_090 Hb_001782_090 Hb_000905_010 Hb_000905_010 Hb_001782_090--Hb_000905_010 Hb_000777_010 Hb_000777_010 Hb_001782_090--Hb_000777_010 Hb_006599_040 Hb_006599_040 Hb_001782_090--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_001782_090--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_001782_090--Hb_174010_030 Hb_026317_020 Hb_026317_020 Hb_001782_090--Hb_026317_020 Hb_000905_010--Hb_000777_010 Hb_000905_010--Hb_006599_040 Hb_000905_010--Hb_004145_030 Hb_000905_010--Hb_174010_030 Hb_002396_010 Hb_002396_010 Hb_000905_010--Hb_002396_010 Hb_000777_010--Hb_006599_040 Hb_000777_010--Hb_004145_030 Hb_000777_010--Hb_174010_030 Hb_000777_010--Hb_002396_010 Hb_006599_040--Hb_004145_030 Hb_006599_040--Hb_174010_030 Hb_006599_040--Hb_002396_010 Hb_001348_240 Hb_001348_240 Hb_006599_040--Hb_001348_240 Hb_004145_030--Hb_174010_030 Hb_004145_030--Hb_002396_010 Hb_004145_030--Hb_001348_240 Hb_174010_030--Hb_002396_010 Hb_174010_030--Hb_001348_240 Hb_001307_230 Hb_001307_230 Hb_026317_020--Hb_001307_230 Hb_026317_020--Hb_000905_010 Hb_026317_020--Hb_000777_010 Hb_026317_020--Hb_006599_040 Hb_026317_020--Hb_004145_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00674411 0.0717635

CAGE analysis