Hb_001348_240

Information

Type -
Description -
Location Contig1348: 178714-183468
Sequence    

Annotation

kegg
ID tcc:TCM_017700
description Retrotransposon protein, putative
nr
ID AAT66771.2
description Putative polyprotein, identical [Solanum demissum]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID Q6F2D6
description Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_240 0.0 - - Putative polyprotein, identical [Solanum demissum]
2 Hb_002396_010 0.0001590184 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
3 Hb_174010_030 0.0004914819 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_004145_030 0.0006849945 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_006599_040 0.0007479637 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000777_010 0.0012353414 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
7 Hb_000905_010 0.0015012509 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
8 Hb_001782_090 0.0019671034 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
9 Hb_026317_020 0.0035422678 - - hypothetical protein VITISV_035911 [Vitis vinifera]
10 Hb_001307_230 0.0047827967 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
11 Hb_001172_110 0.0066237393 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_002375_100 0.0075082126 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
13 Hb_000723_150 0.0100140332 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
14 Hb_110426_010 0.010660555 - - -
15 Hb_133913_010 0.0143582791 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_000288_050 0.0146625192 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001385_020 0.0151429106 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
18 Hb_002874_220 0.0178492104 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
19 Hb_008562_020 0.0184638034 - - -
20 Hb_002342_010 0.0216475278 - - RALF-LIKE 27 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001348_240 Hb_001348_240 Hb_002396_010 Hb_002396_010 Hb_001348_240--Hb_002396_010 Hb_174010_030 Hb_174010_030 Hb_001348_240--Hb_174010_030 Hb_004145_030 Hb_004145_030 Hb_001348_240--Hb_004145_030 Hb_006599_040 Hb_006599_040 Hb_001348_240--Hb_006599_040 Hb_000777_010 Hb_000777_010 Hb_001348_240--Hb_000777_010 Hb_000905_010 Hb_000905_010 Hb_001348_240--Hb_000905_010 Hb_002396_010--Hb_174010_030 Hb_002396_010--Hb_004145_030 Hb_002396_010--Hb_006599_040 Hb_002396_010--Hb_000777_010 Hb_002396_010--Hb_000905_010 Hb_174010_030--Hb_004145_030 Hb_174010_030--Hb_006599_040 Hb_174010_030--Hb_000777_010 Hb_174010_030--Hb_000905_010 Hb_004145_030--Hb_006599_040 Hb_004145_030--Hb_000777_010 Hb_004145_030--Hb_000905_010 Hb_006599_040--Hb_000777_010 Hb_006599_040--Hb_000905_010 Hb_000777_010--Hb_000905_010 Hb_001782_090 Hb_001782_090 Hb_000777_010--Hb_001782_090 Hb_000905_010--Hb_001782_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00341413 0.0369371

CAGE analysis