Hb_002375_100

Information

Type -
Description -
Location Contig2375: 127437-129112
Sequence    

Annotation

kegg
ID vvi:104878944
description uncharacterized LOC104878944
nr
ID XP_010648238.1
description PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B5G3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24954: 121938-140089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_100 0.0 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
2 Hb_001172_110 0.0008845533 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
3 Hb_000723_150 0.0025061602 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
4 Hb_001307_230 0.0027255948 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
5 Hb_110426_010 0.0031527964 - - -
6 Hb_026317_020 0.0039661382 - - hypothetical protein VITISV_035911 [Vitis vinifera]
7 Hb_001782_090 0.0055412599 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
8 Hb_000905_010 0.0060070866 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
9 Hb_000777_010 0.0062729786 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
10 Hb_006599_040 0.006760319 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_004145_030 0.0068232829 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_174010_030 0.0070167786 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
13 Hb_002396_010 0.0073492104 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
14 Hb_001348_240 0.0075082126 - - Putative polyprotein, identical [Solanum demissum]
15 Hb_002874_220 0.0103434433 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
16 Hb_008562_020 0.0109582664 - - -
17 Hb_002342_010 0.0141433292 - - RALF-LIKE 27 family protein [Populus trichocarpa]
18 Hb_094256_010 0.0150911159 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_013420_030 0.0175187576 - - conserved hypothetical protein [Ricinus communis]
20 Hb_133913_010 0.0218619506 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]

Gene co-expression network

sample Hb_002375_100 Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_002375_100--Hb_001172_110 Hb_000723_150 Hb_000723_150 Hb_002375_100--Hb_000723_150 Hb_001307_230 Hb_001307_230 Hb_002375_100--Hb_001307_230 Hb_110426_010 Hb_110426_010 Hb_002375_100--Hb_110426_010 Hb_026317_020 Hb_026317_020 Hb_002375_100--Hb_026317_020 Hb_001782_090 Hb_001782_090 Hb_002375_100--Hb_001782_090 Hb_001172_110--Hb_001307_230 Hb_001172_110--Hb_026317_020 Hb_001172_110--Hb_000723_150 Hb_001172_110--Hb_110426_010 Hb_001172_110--Hb_001782_090 Hb_000723_150--Hb_110426_010 Hb_000723_150--Hb_001307_230 Hb_000723_150--Hb_026317_020 Hb_002874_220 Hb_002874_220 Hb_000723_150--Hb_002874_220 Hb_001307_230--Hb_026317_020 Hb_001307_230--Hb_001782_090 Hb_000905_010 Hb_000905_010 Hb_001307_230--Hb_000905_010 Hb_000777_010 Hb_000777_010 Hb_001307_230--Hb_000777_010 Hb_110426_010--Hb_001307_230 Hb_110426_010--Hb_026317_020 Hb_110426_010--Hb_002874_220 Hb_026317_020--Hb_001782_090 Hb_026317_020--Hb_000905_010 Hb_026317_020--Hb_000777_010 Hb_006599_040 Hb_006599_040 Hb_026317_020--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_026317_020--Hb_004145_030 Hb_001782_090--Hb_000905_010 Hb_001782_090--Hb_000777_010 Hb_001782_090--Hb_006599_040 Hb_001782_090--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_001782_090--Hb_174010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.016297 0.165598

CAGE analysis