Hb_002874_220

Information

Type -
Description -
Location Contig2874: 171698-172687
Sequence    

Annotation

kegg
ID vvi:100261499
description probable LRR receptor-like serine/threonine-protein kinase RLK
nr
ID XP_012077494.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
swissprot
ID C0LGR9
description Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1
trembl
ID A0A067KBA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06983 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g31250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_220 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
2 Hb_008562_020 0.0006149402 - - -
3 Hb_002342_010 0.0038008122 - - RALF-LIKE 27 family protein [Populus trichocarpa]
4 Hb_094256_010 0.0047489044 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_013420_030 0.0071774618 - - conserved hypothetical protein [Ricinus communis]
6 Hb_110426_010 0.007191049 - - -
7 Hb_000723_150 0.0078376321 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
8 Hb_002375_100 0.0103434433 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
9 Hb_001172_110 0.0112278185 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
10 Hb_003088_040 0.0118675023 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
11 Hb_001307_230 0.0130683964 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
12 Hb_026317_020 0.0143085557 - - hypothetical protein VITISV_035911 [Vitis vinifera]
13 Hb_001782_090 0.0158831056 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
14 Hb_000905_010 0.016348745 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
15 Hb_000777_010 0.0166145264 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
16 Hb_073995_010 0.0168527513 - - receptor-like kinase [Medicago truncatula]
17 Hb_006599_040 0.0171016569 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004145_030 0.017164593 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_174010_030 0.0173580023 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_002396_010 0.0176902824 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]

Gene co-expression network

sample Hb_002874_220 Hb_002874_220 Hb_008562_020 Hb_008562_020 Hb_002874_220--Hb_008562_020 Hb_002342_010 Hb_002342_010 Hb_002874_220--Hb_002342_010 Hb_094256_010 Hb_094256_010 Hb_002874_220--Hb_094256_010 Hb_013420_030 Hb_013420_030 Hb_002874_220--Hb_013420_030 Hb_110426_010 Hb_110426_010 Hb_002874_220--Hb_110426_010 Hb_000723_150 Hb_000723_150 Hb_002874_220--Hb_000723_150 Hb_008562_020--Hb_002342_010 Hb_008562_020--Hb_094256_010 Hb_008562_020--Hb_013420_030 Hb_008562_020--Hb_110426_010 Hb_008562_020--Hb_000723_150 Hb_002342_010--Hb_094256_010 Hb_002342_010--Hb_013420_030 Hb_003088_040 Hb_003088_040 Hb_002342_010--Hb_003088_040 Hb_002342_010--Hb_110426_010 Hb_094256_010--Hb_013420_030 Hb_094256_010--Hb_003088_040 Hb_094256_010--Hb_110426_010 Hb_013420_030--Hb_003088_040 Hb_073995_010 Hb_073995_010 Hb_013420_030--Hb_073995_010 Hb_110426_010--Hb_000723_150 Hb_002375_100 Hb_002375_100 Hb_110426_010--Hb_002375_100 Hb_001172_110 Hb_001172_110 Hb_110426_010--Hb_001172_110 Hb_001307_230 Hb_001307_230 Hb_110426_010--Hb_001307_230 Hb_026317_020 Hb_026317_020 Hb_110426_010--Hb_026317_020 Hb_000723_150--Hb_002375_100 Hb_000723_150--Hb_001172_110 Hb_000723_150--Hb_001307_230 Hb_000723_150--Hb_026317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.177541 1.65896

CAGE analysis