Hb_003088_040

Information

Type -
Description -
Location Contig3088: 44629-46791
Sequence    

Annotation

kegg
ID mdm:103417518
description uncharacterized LOC103417518
nr
ID XP_008353918.1
description PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
swissprot
ID -
description -
trembl
ID V4UQQ7
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010288mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10003434mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003088_040 0.0 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
2 Hb_013420_030 0.0046906637 - - conserved hypothetical protein [Ricinus communis]
3 Hb_073995_010 0.0049867668 - - receptor-like kinase [Medicago truncatula]
4 Hb_012781_030 0.0059205337 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_094256_010 0.0071192275 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_002342_010 0.0080672626 - - RALF-LIKE 27 family protein [Populus trichocarpa]
7 Hb_154188_010 0.0085762354 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
8 Hb_008562_020 0.0112526924 - - -
9 Hb_002874_220 0.0118675023 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
10 Hb_110426_010 0.0190559204 - - -
11 Hb_000723_150 0.0197021647 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
12 Hb_002375_100 0.0222064997 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
13 Hb_000465_010 0.0223601884 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
14 Hb_001172_110 0.0230902913 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_001307_230 0.0249295483 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
16 Hb_026317_020 0.026168736 - - hypothetical protein VITISV_035911 [Vitis vinifera]
17 Hb_001782_090 0.0277419564 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
18 Hb_000905_010 0.0282071819 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
19 Hb_000777_010 0.0284727227 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
20 Hb_006599_040 0.0289594044 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003088_040 Hb_003088_040 Hb_013420_030 Hb_013420_030 Hb_003088_040--Hb_013420_030 Hb_073995_010 Hb_073995_010 Hb_003088_040--Hb_073995_010 Hb_012781_030 Hb_012781_030 Hb_003088_040--Hb_012781_030 Hb_094256_010 Hb_094256_010 Hb_003088_040--Hb_094256_010 Hb_002342_010 Hb_002342_010 Hb_003088_040--Hb_002342_010 Hb_154188_010 Hb_154188_010 Hb_003088_040--Hb_154188_010 Hb_013420_030--Hb_094256_010 Hb_013420_030--Hb_002342_010 Hb_008562_020 Hb_008562_020 Hb_013420_030--Hb_008562_020 Hb_002874_220 Hb_002874_220 Hb_013420_030--Hb_002874_220 Hb_013420_030--Hb_073995_010 Hb_073995_010--Hb_012781_030 Hb_073995_010--Hb_154188_010 Hb_073995_010--Hb_094256_010 Hb_073995_010--Hb_002342_010 Hb_012781_030--Hb_154188_010 Hb_012781_030--Hb_013420_030 Hb_012781_030--Hb_094256_010 Hb_012781_030--Hb_002342_010 Hb_094256_010--Hb_002342_010 Hb_094256_010--Hb_008562_020 Hb_094256_010--Hb_002874_220 Hb_110426_010 Hb_110426_010 Hb_094256_010--Hb_110426_010 Hb_002342_010--Hb_008562_020 Hb_002342_010--Hb_002874_220 Hb_002342_010--Hb_110426_010 Hb_154188_010--Hb_013420_030 Hb_000465_010 Hb_000465_010 Hb_154188_010--Hb_000465_010 Hb_154188_010--Hb_094256_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0573503 0.488381

CAGE analysis