Hb_000465_010

Information

Type -
Description -
Location Contig465: 5203-7620
Sequence    

Annotation

kegg
ID cit:102626887
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like
nr
ID XP_006477172.1
description PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
swissprot
ID Q8RXN4
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1
trembl
ID A0A067F5K4
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0169552mg PE=4 SV=1
Gene Ontology
ID GO:0008233
description 3-hydroxyisobutyryl- hydrolase-like protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_010 0.0 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
2 Hb_120076_010 0.0082460435 - - PREDICTED: uncharacterized protein LOC104783951 [Camelina sativa]
3 Hb_000025_460 0.010010262 - - PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
4 Hb_154188_010 0.0137876196 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
5 Hb_003868_010 0.0143023134 - - -
6 Hb_012781_030 0.0164426926 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_073995_010 0.0173761318 - - receptor-like kinase [Medicago truncatula]
8 Hb_010367_010 0.0185869182 - - -
9 Hb_003088_040 0.0223601884 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
10 Hb_013420_030 0.0270467901 - - conserved hypothetical protein [Ricinus communis]
11 Hb_094256_010 0.0294726582 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_002342_010 0.0304195291 - - RALF-LIKE 27 family protein [Populus trichocarpa]
13 Hb_008562_020 0.0336005803 - - -
14 Hb_002874_220 0.0342144613 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
15 Hb_000466_180 0.0413856159 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_110426_010 0.041389955 - - -
17 Hb_007167_100 0.0415305517 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_007251_010 0.0417580426 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
19 Hb_010132_070 0.0418777728 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_034066_010 0.0419056891 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000465_010 Hb_000465_010 Hb_120076_010 Hb_120076_010 Hb_000465_010--Hb_120076_010 Hb_000025_460 Hb_000025_460 Hb_000465_010--Hb_000025_460 Hb_154188_010 Hb_154188_010 Hb_000465_010--Hb_154188_010 Hb_003868_010 Hb_003868_010 Hb_000465_010--Hb_003868_010 Hb_012781_030 Hb_012781_030 Hb_000465_010--Hb_012781_030 Hb_073995_010 Hb_073995_010 Hb_000465_010--Hb_073995_010 Hb_120076_010--Hb_000025_460 Hb_120076_010--Hb_003868_010 Hb_010367_010 Hb_010367_010 Hb_120076_010--Hb_010367_010 Hb_120076_010--Hb_154188_010 Hb_120076_010--Hb_012781_030 Hb_000025_460--Hb_003868_010 Hb_000025_460--Hb_010367_010 Hb_000025_460--Hb_154188_010 Hb_000025_460--Hb_012781_030 Hb_154188_010--Hb_012781_030 Hb_154188_010--Hb_073995_010 Hb_003088_040 Hb_003088_040 Hb_154188_010--Hb_003088_040 Hb_013420_030 Hb_013420_030 Hb_154188_010--Hb_013420_030 Hb_094256_010 Hb_094256_010 Hb_154188_010--Hb_094256_010 Hb_003868_010--Hb_010367_010 Hb_000466_180 Hb_000466_180 Hb_003868_010--Hb_000466_180 Hb_007167_100 Hb_007167_100 Hb_003868_010--Hb_007167_100 Hb_012781_030--Hb_073995_010 Hb_012781_030--Hb_003088_040 Hb_012781_030--Hb_013420_030 Hb_012781_030--Hb_094256_010 Hb_002342_010 Hb_002342_010 Hb_012781_030--Hb_002342_010 Hb_073995_010--Hb_003088_040 Hb_073995_010--Hb_013420_030 Hb_073995_010--Hb_094256_010 Hb_073995_010--Hb_002342_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12365 0.891705

CAGE analysis