Hb_000025_460

Information

Type -
Description -
Location Contig25: 425166-428675
Sequence    

Annotation

kegg
ID bvg:104895905
description uncharacterized LOC104895905
nr
ID XP_010680853.1
description PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A087GHT7
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G134500 PE=4 SV=1
Gene Ontology
ID GO:0004190
description PREDICTED: uncharacterized protein LOC104895905

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 028_K10r.ab1: 416128-438420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_460 0.0 - - PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
2 Hb_120076_010 0.0017643964 - - PREDICTED: uncharacterized protein LOC104783951 [Camelina sativa]
3 Hb_003868_010 0.004292792 - - -
4 Hb_010367_010 0.008578561 - - -
5 Hb_000465_010 0.010010262 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
6 Hb_154188_010 0.0237936627 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
7 Hb_012781_030 0.0264473278 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_073995_010 0.0273802245 - - receptor-like kinase [Medicago truncatula]
9 Hb_000466_180 0.0313901047 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_007167_100 0.0315351558 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_007251_010 0.0317628285 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
12 Hb_010132_070 0.0318826548 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_034066_010 0.0319105936 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_144850_070 0.0319555415 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
15 Hb_012535_030 0.0319637294 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_114981_010 0.0320296641 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_004667_010 0.0320689473 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007719_020 0.0320963174 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_010907_010 0.032171537 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_147844_010 0.0322658709 - - putative 60S ribosomal protein L37 [Aegilops tauschii]

Gene co-expression network

sample Hb_000025_460 Hb_000025_460 Hb_120076_010 Hb_120076_010 Hb_000025_460--Hb_120076_010 Hb_003868_010 Hb_003868_010 Hb_000025_460--Hb_003868_010 Hb_010367_010 Hb_010367_010 Hb_000025_460--Hb_010367_010 Hb_000465_010 Hb_000465_010 Hb_000025_460--Hb_000465_010 Hb_154188_010 Hb_154188_010 Hb_000025_460--Hb_154188_010 Hb_012781_030 Hb_012781_030 Hb_000025_460--Hb_012781_030 Hb_120076_010--Hb_003868_010 Hb_120076_010--Hb_000465_010 Hb_120076_010--Hb_010367_010 Hb_120076_010--Hb_154188_010 Hb_120076_010--Hb_012781_030 Hb_003868_010--Hb_010367_010 Hb_003868_010--Hb_000465_010 Hb_000466_180 Hb_000466_180 Hb_003868_010--Hb_000466_180 Hb_007167_100 Hb_007167_100 Hb_003868_010--Hb_007167_100 Hb_010367_010--Hb_000465_010 Hb_010367_010--Hb_000466_180 Hb_010367_010--Hb_007167_100 Hb_000465_010--Hb_154188_010 Hb_000465_010--Hb_012781_030 Hb_073995_010 Hb_073995_010 Hb_000465_010--Hb_073995_010 Hb_154188_010--Hb_012781_030 Hb_154188_010--Hb_073995_010 Hb_003088_040 Hb_003088_040 Hb_154188_010--Hb_003088_040 Hb_013420_030 Hb_013420_030 Hb_154188_010--Hb_013420_030 Hb_094256_010 Hb_094256_010 Hb_154188_010--Hb_094256_010 Hb_012781_030--Hb_073995_010 Hb_012781_030--Hb_003088_040 Hb_012781_030--Hb_013420_030 Hb_012781_030--Hb_094256_010 Hb_002342_010 Hb_002342_010 Hb_012781_030--Hb_002342_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0543609 0.365111

CAGE analysis