Hb_154188_010

Information

Type -
Description -
Location Contig154188: 231-611
Sequence    

Annotation

kegg
ID cic:CICLE_v10003434mg
description hypothetical protein
nr
ID XP_006432547.1
description hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SYA9
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003434mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description hypothetical protein CICLE_v10003434mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154188_010 0.0 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
2 Hb_012781_030 0.0026558963 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_073995_010 0.0035896907 - - receptor-like kinase [Medicago truncatula]
4 Hb_003088_040 0.0085762354 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
5 Hb_013420_030 0.0132661084 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000465_010 0.0137876196 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
7 Hb_094256_010 0.0156940347 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_002342_010 0.0166417778 - - RALF-LIKE 27 family protein [Populus trichocarpa]
9 Hb_008562_020 0.0198260466 - - -
10 Hb_002874_220 0.0204406002 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
11 Hb_120076_010 0.0220304321 - - PREDICTED: uncharacterized protein LOC104783951 [Camelina sativa]
12 Hb_000025_460 0.0237936627 - - PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
13 Hb_110426_010 0.0276252238 - - -
14 Hb_003868_010 0.0280828893 - - -
15 Hb_000723_150 0.0282710537 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
16 Hb_002375_100 0.0307736652 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
17 Hb_001172_110 0.0316568037 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
18 Hb_010367_010 0.0323640928 - - -
19 Hb_001307_230 0.0334946254 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
20 Hb_026317_020 0.0347327876 - - hypothetical protein VITISV_035911 [Vitis vinifera]

Gene co-expression network

sample Hb_154188_010 Hb_154188_010 Hb_012781_030 Hb_012781_030 Hb_154188_010--Hb_012781_030 Hb_073995_010 Hb_073995_010 Hb_154188_010--Hb_073995_010 Hb_003088_040 Hb_003088_040 Hb_154188_010--Hb_003088_040 Hb_013420_030 Hb_013420_030 Hb_154188_010--Hb_013420_030 Hb_000465_010 Hb_000465_010 Hb_154188_010--Hb_000465_010 Hb_094256_010 Hb_094256_010 Hb_154188_010--Hb_094256_010 Hb_012781_030--Hb_073995_010 Hb_012781_030--Hb_003088_040 Hb_012781_030--Hb_013420_030 Hb_012781_030--Hb_094256_010 Hb_002342_010 Hb_002342_010 Hb_012781_030--Hb_002342_010 Hb_073995_010--Hb_003088_040 Hb_073995_010--Hb_013420_030 Hb_073995_010--Hb_094256_010 Hb_073995_010--Hb_002342_010 Hb_003088_040--Hb_013420_030 Hb_003088_040--Hb_094256_010 Hb_003088_040--Hb_002342_010 Hb_013420_030--Hb_094256_010 Hb_013420_030--Hb_002342_010 Hb_008562_020 Hb_008562_020 Hb_013420_030--Hb_008562_020 Hb_002874_220 Hb_002874_220 Hb_013420_030--Hb_002874_220 Hb_120076_010 Hb_120076_010 Hb_000465_010--Hb_120076_010 Hb_000025_460 Hb_000025_460 Hb_000465_010--Hb_000025_460 Hb_003868_010 Hb_003868_010 Hb_000465_010--Hb_003868_010 Hb_000465_010--Hb_012781_030 Hb_000465_010--Hb_073995_010 Hb_094256_010--Hb_002342_010 Hb_094256_010--Hb_008562_020 Hb_094256_010--Hb_002874_220 Hb_110426_010 Hb_110426_010 Hb_094256_010--Hb_110426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0745575 0.594945

CAGE analysis