Hb_012781_030

Information

Type -
Description -
Location Contig12781: 33301-41586
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012781_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_073995_010 0.0009338071 - - receptor-like kinase [Medicago truncatula]
3 Hb_154188_010 0.0026558963 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
4 Hb_003088_040 0.0059205337 - - PREDICTED: uncharacterized protein LOC103417518 [Malus domestica]
5 Hb_013420_030 0.0106107579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_094256_010 0.0130389367 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_002342_010 0.0139867916 - - RALF-LIKE 27 family protein [Populus trichocarpa]
8 Hb_000465_010 0.0164426926 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
9 Hb_008562_020 0.0171714919 - - -
10 Hb_002874_220 0.0177861387 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
11 Hb_120076_010 0.0246843921 - - PREDICTED: uncharacterized protein LOC104783951 [Camelina sativa]
12 Hb_110426_010 0.024972099 - - -
13 Hb_000723_150 0.0256180717 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
14 Hb_000025_460 0.0264473278 - - PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
15 Hb_002375_100 0.0281212729 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
16 Hb_001172_110 0.0290046333 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
17 Hb_003868_010 0.0307357563 - - -
18 Hb_001307_230 0.0308429405 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
19 Hb_026317_020 0.0320814478 - - hypothetical protein VITISV_035911 [Vitis vinifera]
20 Hb_001782_090 0.0336537569 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]

Gene co-expression network

sample Hb_012781_030 Hb_012781_030 Hb_073995_010 Hb_073995_010 Hb_012781_030--Hb_073995_010 Hb_154188_010 Hb_154188_010 Hb_012781_030--Hb_154188_010 Hb_003088_040 Hb_003088_040 Hb_012781_030--Hb_003088_040 Hb_013420_030 Hb_013420_030 Hb_012781_030--Hb_013420_030 Hb_094256_010 Hb_094256_010 Hb_012781_030--Hb_094256_010 Hb_002342_010 Hb_002342_010 Hb_012781_030--Hb_002342_010 Hb_073995_010--Hb_154188_010 Hb_073995_010--Hb_003088_040 Hb_073995_010--Hb_013420_030 Hb_073995_010--Hb_094256_010 Hb_073995_010--Hb_002342_010 Hb_154188_010--Hb_003088_040 Hb_154188_010--Hb_013420_030 Hb_000465_010 Hb_000465_010 Hb_154188_010--Hb_000465_010 Hb_154188_010--Hb_094256_010 Hb_003088_040--Hb_013420_030 Hb_003088_040--Hb_094256_010 Hb_003088_040--Hb_002342_010 Hb_013420_030--Hb_094256_010 Hb_013420_030--Hb_002342_010 Hb_008562_020 Hb_008562_020 Hb_013420_030--Hb_008562_020 Hb_002874_220 Hb_002874_220 Hb_013420_030--Hb_002874_220 Hb_094256_010--Hb_002342_010 Hb_094256_010--Hb_008562_020 Hb_094256_010--Hb_002874_220 Hb_110426_010 Hb_110426_010 Hb_094256_010--Hb_110426_010 Hb_002342_010--Hb_008562_020 Hb_002342_010--Hb_002874_220 Hb_002342_010--Hb_110426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0055393 0.0450929

CAGE analysis