Hb_000466_180

Information

Type -
Description -
Location Contig466: 368254-380269
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000466_180 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007167_100 0.0001452003 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_007251_010 0.0003731097 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
4 Hb_010132_070 0.0004930619 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_034066_010 0.0005210301 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_144850_070 0.0005660256 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
7 Hb_012535_030 0.0005742221 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_114981_010 0.0006402268 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_004667_010 0.0006795518 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_007719_020 0.0007069511 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_010907_010 0.0007822512 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_147844_010 0.0008766864 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
13 Hb_007014_020 0.0008928904 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_025864_010 0.0009944346 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001446_050 0.0012776483 - - putative polyprotein [Oryza sativa Japonica Group]
16 Hb_010051_010 0.001303286 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_033123_010 0.0013522554 - - Putative polyprotein [Oryza sativa Japonica Group]
18 Hb_007332_010 0.0016328121 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_013781_010 0.0020751855 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.002110057 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000466_180 Hb_000466_180 Hb_007167_100 Hb_007167_100 Hb_000466_180--Hb_007167_100 Hb_007251_010 Hb_007251_010 Hb_000466_180--Hb_007251_010 Hb_010132_070 Hb_010132_070 Hb_000466_180--Hb_010132_070 Hb_034066_010 Hb_034066_010 Hb_000466_180--Hb_034066_010 Hb_144850_070 Hb_144850_070 Hb_000466_180--Hb_144850_070 Hb_012535_030 Hb_012535_030 Hb_000466_180--Hb_012535_030 Hb_007167_100--Hb_007251_010 Hb_007167_100--Hb_010132_070 Hb_007167_100--Hb_034066_010 Hb_007167_100--Hb_144850_070 Hb_007167_100--Hb_012535_030 Hb_007251_010--Hb_010132_070 Hb_007251_010--Hb_034066_010 Hb_007251_010--Hb_144850_070 Hb_007251_010--Hb_012535_030 Hb_114981_010 Hb_114981_010 Hb_007251_010--Hb_114981_010 Hb_010132_070--Hb_034066_010 Hb_010132_070--Hb_144850_070 Hb_010132_070--Hb_012535_030 Hb_010132_070--Hb_114981_010 Hb_004667_010 Hb_004667_010 Hb_010132_070--Hb_004667_010 Hb_034066_010--Hb_144850_070 Hb_034066_010--Hb_012535_030 Hb_034066_010--Hb_114981_010 Hb_034066_010--Hb_004667_010 Hb_144850_070--Hb_012535_030 Hb_144850_070--Hb_114981_010 Hb_144850_070--Hb_004667_010 Hb_007719_020 Hb_007719_020 Hb_144850_070--Hb_007719_020 Hb_012535_030--Hb_114981_010 Hb_012535_030--Hb_004667_010 Hb_012535_030--Hb_007719_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00250593 0.0136179

CAGE analysis