Hb_144850_070

Information

Type -
Description -
Location Contig144850: 71442-80185
Sequence    

Annotation

kegg
ID tcc:TCM_017700
description Retrotransposon protein, putative
nr
ID CAE05583.1
description OSJNBa0032N05.11 [Oryza sativa Japonica Group]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q5CAI7
description OSJNBa0032N05.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032N05.11 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144850_070 0.0 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
2 Hb_012535_030 8.1965e-06 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_034066_010 4.49955e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_010132_070 7.29638e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_114981_010 7.42012e-05 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_004667_010 0.0001135262 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_007719_020 0.0001409256 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_007251_010 0.0001929159 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
9 Hb_010907_010 0.0002162256 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_147844_010 0.000310661 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
11 Hb_007014_020 0.0003268649 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_007167_100 0.0004208254 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_025864_010 0.0004284093 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000466_180 0.0005660256 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001446_050 0.0007116232 - - putative polyprotein [Oryza sativa Japonica Group]
16 Hb_010051_010 0.000737261 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_033123_010 0.0007862303 - - Putative polyprotein [Oryza sativa Japonica Group]
18 Hb_007332_010 0.0010667874 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_013781_010 0.0015091616 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.0015440331 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_144850_070 Hb_144850_070 Hb_012535_030 Hb_012535_030 Hb_144850_070--Hb_012535_030 Hb_034066_010 Hb_034066_010 Hb_144850_070--Hb_034066_010 Hb_010132_070 Hb_010132_070 Hb_144850_070--Hb_010132_070 Hb_114981_010 Hb_114981_010 Hb_144850_070--Hb_114981_010 Hb_004667_010 Hb_004667_010 Hb_144850_070--Hb_004667_010 Hb_007719_020 Hb_007719_020 Hb_144850_070--Hb_007719_020 Hb_012535_030--Hb_034066_010 Hb_012535_030--Hb_114981_010 Hb_012535_030--Hb_010132_070 Hb_012535_030--Hb_004667_010 Hb_012535_030--Hb_007719_020 Hb_034066_010--Hb_010132_070 Hb_034066_010--Hb_114981_010 Hb_007251_010 Hb_007251_010 Hb_034066_010--Hb_007251_010 Hb_034066_010--Hb_004667_010 Hb_010132_070--Hb_007251_010 Hb_010132_070--Hb_114981_010 Hb_010132_070--Hb_004667_010 Hb_114981_010--Hb_004667_010 Hb_114981_010--Hb_007719_020 Hb_010907_010 Hb_010907_010 Hb_114981_010--Hb_010907_010 Hb_004667_010--Hb_007719_020 Hb_004667_010--Hb_010907_010 Hb_007719_020--Hb_010907_010 Hb_147844_010 Hb_147844_010 Hb_007719_020--Hb_147844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00323573 0.0175193

CAGE analysis