Hb_010907_010

Information

Type -
Description -
Location Contig10907: 686-4710
Sequence    

Annotation

kegg
ID mdm:103445517
description uncharacterized LOC103445517
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID Q8H6Q8
description CTV.20 OS=Poncirus trifoliata GN=CTV.20 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105634770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010907_010 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_007719_020 7.53001e-05 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_147844_010 9.44353e-05 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
4 Hb_004667_010 0.0001026994 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007014_020 0.0001106393 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
6 Hb_114981_010 0.0001420244 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_012535_030 0.0002080291 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_025864_010 0.0002121837 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_144850_070 0.0002162256 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
10 Hb_034066_010 0.0002612211 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_010132_070 0.0002891894 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_007251_010 0.0004091415 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
13 Hb_001446_050 0.0004953976 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_010051_010 0.0005210354 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_033123_010 0.0005700048 - - Putative polyprotein [Oryza sativa Japonica Group]
16 Hb_007167_100 0.0006370509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000466_180 0.0007822512 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007332_010 0.000850562 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_013781_010 0.0012929364 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.0013278079 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010907_010 Hb_010907_010 Hb_007719_020 Hb_007719_020 Hb_010907_010--Hb_007719_020 Hb_147844_010 Hb_147844_010 Hb_010907_010--Hb_147844_010 Hb_004667_010 Hb_004667_010 Hb_010907_010--Hb_004667_010 Hb_007014_020 Hb_007014_020 Hb_010907_010--Hb_007014_020 Hb_114981_010 Hb_114981_010 Hb_010907_010--Hb_114981_010 Hb_012535_030 Hb_012535_030 Hb_010907_010--Hb_012535_030 Hb_007719_020--Hb_004667_010 Hb_007719_020--Hb_114981_010 Hb_007719_020--Hb_012535_030 Hb_144850_070 Hb_144850_070 Hb_007719_020--Hb_144850_070 Hb_007719_020--Hb_147844_010 Hb_147844_010--Hb_007014_020 Hb_025864_010 Hb_025864_010 Hb_147844_010--Hb_025864_010 Hb_147844_010--Hb_004667_010 Hb_147844_010--Hb_114981_010 Hb_004667_010--Hb_114981_010 Hb_004667_010--Hb_012535_030 Hb_004667_010--Hb_144850_070 Hb_034066_010 Hb_034066_010 Hb_004667_010--Hb_034066_010 Hb_007014_020--Hb_025864_010 Hb_007014_020--Hb_007719_020 Hb_007014_020--Hb_004667_010 Hb_007014_020--Hb_114981_010 Hb_114981_010--Hb_012535_030 Hb_114981_010--Hb_144850_070 Hb_114981_010--Hb_034066_010 Hb_012535_030--Hb_144850_070 Hb_012535_030--Hb_034066_010 Hb_010132_070 Hb_010132_070 Hb_012535_030--Hb_010132_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00351384 0.0189984

CAGE analysis