Hb_004667_010

Information

Type -
Description -
Location Contig4667: 17216-21929
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID A6NKG5
description Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004667_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007719_020 2.73993e-05 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_114981_010 3.9325e-05 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_010907_010 0.0001026994 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_012535_030 0.0001053297 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_144850_070 0.0001135262 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
7 Hb_034066_010 0.0001585217 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_010132_070 0.00018649 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_147844_010 0.0001971347 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
10 Hb_007014_020 0.0002133387 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_007251_010 0.0003064421 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
12 Hb_025864_010 0.000314883 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007167_100 0.0005343516 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001446_050 0.000598097 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_010051_010 0.0006237348 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_033123_010 0.0006727042 - - Putative polyprotein [Oryza sativa Japonica Group]
17 Hb_000466_180 0.0006795518 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007332_010 0.0009532613 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_013781_010 0.0013956356 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.0014305071 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004667_010 Hb_004667_010 Hb_007719_020 Hb_007719_020 Hb_004667_010--Hb_007719_020 Hb_114981_010 Hb_114981_010 Hb_004667_010--Hb_114981_010 Hb_010907_010 Hb_010907_010 Hb_004667_010--Hb_010907_010 Hb_012535_030 Hb_012535_030 Hb_004667_010--Hb_012535_030 Hb_144850_070 Hb_144850_070 Hb_004667_010--Hb_144850_070 Hb_034066_010 Hb_034066_010 Hb_004667_010--Hb_034066_010 Hb_007719_020--Hb_114981_010 Hb_007719_020--Hb_010907_010 Hb_007719_020--Hb_012535_030 Hb_007719_020--Hb_144850_070 Hb_147844_010 Hb_147844_010 Hb_007719_020--Hb_147844_010 Hb_114981_010--Hb_012535_030 Hb_114981_010--Hb_144850_070 Hb_114981_010--Hb_034066_010 Hb_114981_010--Hb_010907_010 Hb_010907_010--Hb_147844_010 Hb_007014_020 Hb_007014_020 Hb_010907_010--Hb_007014_020 Hb_010907_010--Hb_012535_030 Hb_012535_030--Hb_144850_070 Hb_012535_030--Hb_034066_010 Hb_010132_070 Hb_010132_070 Hb_012535_030--Hb_010132_070 Hb_144850_070--Hb_034066_010 Hb_144850_070--Hb_010132_070 Hb_034066_010--Hb_010132_070 Hb_007251_010 Hb_007251_010 Hb_034066_010--Hb_007251_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00338123 0.0182936

CAGE analysis