Hb_147844_010

Information

Type -
Description -
Location Contig147844: 242-783
Sequence    

Annotation

kegg
ID cmo:103489942
description 60S ribosomal protein L37-3
nr
ID EMT07677.1
description putative 60S ribosomal protein L37 [Aegilops tauschii]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID M8AT76
description Putative 60S ribosomal protein L37 OS=Aegilops tauschii GN=F775_10281 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147844_010 0.0 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
2 Hb_007014_020 1.6204e-05 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_010907_010 9.44353e-05 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_025864_010 0.0001177483 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007719_020 0.0001697354 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_004667_010 0.0001971347 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_114981_010 0.0002364597 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_012535_030 0.0003024645 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_144850_070 0.000310661 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
10 Hb_034066_010 0.0003556565 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_010132_070 0.0003836247 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001446_050 0.0004009623 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_010051_010 0.0004266001 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_033123_010 0.0004755695 - - Putative polyprotein [Oryza sativa Japonica Group]
15 Hb_007251_010 0.0005035768 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
16 Hb_007167_100 0.0007314862 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_007332_010 0.0007561267 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_000466_180 0.0008766864 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_013781_010 0.0011985012 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.0012333727 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_147844_010 Hb_147844_010 Hb_007014_020 Hb_007014_020 Hb_147844_010--Hb_007014_020 Hb_010907_010 Hb_010907_010 Hb_147844_010--Hb_010907_010 Hb_025864_010 Hb_025864_010 Hb_147844_010--Hb_025864_010 Hb_007719_020 Hb_007719_020 Hb_147844_010--Hb_007719_020 Hb_004667_010 Hb_004667_010 Hb_147844_010--Hb_004667_010 Hb_114981_010 Hb_114981_010 Hb_147844_010--Hb_114981_010 Hb_007014_020--Hb_025864_010 Hb_007014_020--Hb_010907_010 Hb_007014_020--Hb_007719_020 Hb_007014_020--Hb_004667_010 Hb_007014_020--Hb_114981_010 Hb_010907_010--Hb_007719_020 Hb_010907_010--Hb_004667_010 Hb_010907_010--Hb_114981_010 Hb_012535_030 Hb_012535_030 Hb_010907_010--Hb_012535_030 Hb_025864_010--Hb_010907_010 Hb_001446_050 Hb_001446_050 Hb_025864_010--Hb_001446_050 Hb_025864_010--Hb_007719_020 Hb_010051_010 Hb_010051_010 Hb_025864_010--Hb_010051_010 Hb_007719_020--Hb_004667_010 Hb_007719_020--Hb_114981_010 Hb_007719_020--Hb_012535_030 Hb_144850_070 Hb_144850_070 Hb_007719_020--Hb_144850_070 Hb_004667_010--Hb_114981_010 Hb_004667_010--Hb_012535_030 Hb_004667_010--Hb_144850_070 Hb_034066_010 Hb_034066_010 Hb_004667_010--Hb_034066_010 Hb_114981_010--Hb_012535_030 Hb_114981_010--Hb_144850_070 Hb_114981_010--Hb_034066_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.93538 15.8611

CAGE analysis