Hb_006778_010

Information

Type -
Description -
Location Contig6778: 4398-6864
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012490570.1
description PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q6UU19
description Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0096K16.24 PE=4 SV=1
Gene Ontology
ID GO:0043231
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006778_010 0.0 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
2 Hb_027522_020 0.1436755042 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000585_090 0.1499163399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105114407 [Populus euphratica]
4 Hb_164415_010 0.1582395598 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003915_030 0.1610703721 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
6 Hb_004987_050 0.1632964937 - - -
7 Hb_000764_050 0.1636610934 - - hypothetical protein JCGZ_09935 [Jatropha curcas]
8 Hb_018283_010 0.1641610427 - - hypothetical protein VITISV_023498 [Vitis vinifera]
9 Hb_006040_010 0.1650614257 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
10 Hb_080126_010 0.1657657684 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
11 Hb_127361_010 0.1658355416 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_055002_010 0.167021513 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
13 Hb_049490_010 0.1678891686 - - hypothetical protein VITISV_013805 [Vitis vinifera]
14 Hb_005054_140 0.1694850153 - - PREDICTED: laccase-4-like [Jatropha curcas]
15 Hb_005352_020 0.1698157967 - - -
16 Hb_005352_010 0.1710489541 - - -
17 Hb_007524_040 0.1713671326 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
18 Hb_000917_020 0.1714226396 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_007645_020 0.1715031417 - - NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]
20 Hb_001255_070 0.1716329041 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_006778_010 Hb_006778_010 Hb_027522_020 Hb_027522_020 Hb_006778_010--Hb_027522_020 Hb_000585_090 Hb_000585_090 Hb_006778_010--Hb_000585_090 Hb_164415_010 Hb_164415_010 Hb_006778_010--Hb_164415_010 Hb_003915_030 Hb_003915_030 Hb_006778_010--Hb_003915_030 Hb_004987_050 Hb_004987_050 Hb_006778_010--Hb_004987_050 Hb_000764_050 Hb_000764_050 Hb_006778_010--Hb_000764_050 Hb_005352_010 Hb_005352_010 Hb_027522_020--Hb_005352_010 Hb_022599_010 Hb_022599_010 Hb_027522_020--Hb_022599_010 Hb_062317_010 Hb_062317_010 Hb_027522_020--Hb_062317_010 Hb_027522_020--Hb_003915_030 Hb_001255_070 Hb_001255_070 Hb_027522_020--Hb_001255_070 Hb_000585_090--Hb_000764_050 Hb_012330_030 Hb_012330_030 Hb_000585_090--Hb_012330_030 Hb_000002_470 Hb_000002_470 Hb_000585_090--Hb_000002_470 Hb_000003_630 Hb_000003_630 Hb_000585_090--Hb_000003_630 Hb_000004_050 Hb_000004_050 Hb_000585_090--Hb_000004_050 Hb_000007_350 Hb_000007_350 Hb_000585_090--Hb_000007_350 Hb_171685_080 Hb_171685_080 Hb_164415_010--Hb_171685_080 Hb_003157_020 Hb_003157_020 Hb_164415_010--Hb_003157_020 Hb_006040_010 Hb_006040_010 Hb_164415_010--Hb_006040_010 Hb_164415_010--Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_164415_010--Hb_005054_140 Hb_017415_010 Hb_017415_010 Hb_164415_010--Hb_017415_010 Hb_003915_030--Hb_006040_010 Hb_145745_010 Hb_145745_010 Hb_003915_030--Hb_145745_010 Hb_006040_020 Hb_006040_020 Hb_003915_030--Hb_006040_020 Hb_001490_020 Hb_001490_020 Hb_003915_030--Hb_001490_020 Hb_007645_020 Hb_007645_020 Hb_003915_030--Hb_007645_020 Hb_004987_050--Hb_005054_140 Hb_018283_010 Hb_018283_010 Hb_004987_050--Hb_018283_010 Hb_080126_010 Hb_080126_010 Hb_004987_050--Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_004987_050--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_004987_050--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_004987_050--Hb_049490_010 Hb_000764_050--Hb_012330_030 Hb_026532_010 Hb_026532_010 Hb_000764_050--Hb_026532_010 Hb_000764_050--Hb_000002_470 Hb_000764_050--Hb_000003_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0126102 0.0110315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00899029 0.425766

CAGE analysis