Hb_005054_140

Information

Type -
Description -
Location Contig5054: 99372-101809
Sequence    

Annotation

kegg
ID rcu:RCOM_0498690
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012087951.1
description PREDICTED: laccase-4-like [Jatropha curcas]
swissprot
ID Q0IQU1
description Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2
trembl
ID B9SWP8
description Laccase OS=Ricinus communis GN=RCOM_0498690 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_140 0.0 - - PREDICTED: laccase-4-like [Jatropha curcas]
2 Hb_004987_050 0.0415082206 - - -
3 Hb_018283_010 0.0689811101 - - hypothetical protein VITISV_023498 [Vitis vinifera]
4 Hb_080126_010 0.0762244624 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
5 Hb_127361_010 0.0765054055 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_055002_010 0.0809898436 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
7 Hb_000959_380 0.0830908859 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
8 Hb_049490_010 0.0839918366 - - hypothetical protein VITISV_013805 [Vitis vinifera]
9 Hb_000002_470 0.0866221546 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
10 Hb_000003_630 0.0866221546 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_000004_050 0.0866221546 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
12 Hb_000007_350 0.0866221546 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000010_490 0.0866221546 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
14 Hb_000017_170 0.0866221546 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
15 Hb_000017_240 0.0866221546 - - -
16 Hb_000022_030 0.0866221546 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
17 Hb_000022_040 0.0866221546 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000023_070 0.0866221546 - - hypothetical protein, partial [Cecembia lonarensis]
19 Hb_000024_060 0.0866221546 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
20 Hb_000027_250 0.0866221546 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_005054_140 Hb_005054_140 Hb_004987_050 Hb_004987_050 Hb_005054_140--Hb_004987_050 Hb_018283_010 Hb_018283_010 Hb_005054_140--Hb_018283_010 Hb_080126_010 Hb_080126_010 Hb_005054_140--Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_005054_140--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_005054_140--Hb_055002_010 Hb_000959_380 Hb_000959_380 Hb_005054_140--Hb_000959_380 Hb_004987_050--Hb_018283_010 Hb_004987_050--Hb_080126_010 Hb_004987_050--Hb_127361_010 Hb_004987_050--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_004987_050--Hb_049490_010 Hb_018283_010--Hb_080126_010 Hb_018283_010--Hb_127361_010 Hb_018283_010--Hb_055002_010 Hb_018283_010--Hb_049490_010 Hb_005352_020 Hb_005352_020 Hb_018283_010--Hb_005352_020 Hb_007524_040 Hb_007524_040 Hb_018283_010--Hb_007524_040 Hb_080126_010--Hb_127361_010 Hb_080126_010--Hb_055002_010 Hb_080126_010--Hb_049490_010 Hb_080126_010--Hb_005352_020 Hb_080126_010--Hb_007524_040 Hb_127361_010--Hb_055002_010 Hb_127361_010--Hb_049490_010 Hb_127361_010--Hb_005352_020 Hb_127361_010--Hb_007524_040 Hb_055002_010--Hb_049490_010 Hb_055002_010--Hb_005352_020 Hb_055002_010--Hb_007524_040 Hb_003144_020 Hb_003144_020 Hb_000959_380--Hb_003144_020 Hb_131816_010 Hb_131816_010 Hb_000959_380--Hb_131816_010 Hb_005914_030 Hb_005914_030 Hb_000959_380--Hb_005914_030 Hb_104509_010 Hb_104509_010 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_005224_020 Hb_005224_020 Hb_000959_380--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00992542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0360124 3.0318

CAGE analysis