Hb_004987_050

Information

Type -
Description -
Location Contig4987: 60759-66353
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45604: 59500-59932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004987_050 0.0 - - -
2 Hb_005054_140 0.0415082206 - - PREDICTED: laccase-4-like [Jatropha curcas]
3 Hb_018283_010 0.0459453894 - - hypothetical protein VITISV_023498 [Vitis vinifera]
4 Hb_080126_010 0.0547341009 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
5 Hb_127361_010 0.0550678214 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_055002_010 0.060336928 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
7 Hb_049490_010 0.0638108728 - - hypothetical protein VITISV_013805 [Vitis vinifera]
8 Hb_005352_020 0.0707300356 - - -
9 Hb_007524_040 0.0757257307 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
10 Hb_000917_020 0.0758969635 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_001255_070 0.0765413748 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_003908_010 0.077294033 - - polyprotein [Oryza australiensis]
13 Hb_005300_050 0.0775781933 - - hypothetical protein VITISV_001308 [Vitis vinifera]
14 Hb_000002_470 0.0854671109 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
15 Hb_000003_630 0.0854671109 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_000004_050 0.0854671109 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
17 Hb_000007_350 0.0854671109 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000010_490 0.0854671109 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
19 Hb_000017_170 0.0854671109 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
20 Hb_000017_240 0.0854671109 - - -

Gene co-expression network

sample Hb_004987_050 Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_004987_050--Hb_005054_140 Hb_018283_010 Hb_018283_010 Hb_004987_050--Hb_018283_010 Hb_080126_010 Hb_080126_010 Hb_004987_050--Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_004987_050--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_004987_050--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_004987_050--Hb_049490_010 Hb_005054_140--Hb_018283_010 Hb_005054_140--Hb_080126_010 Hb_005054_140--Hb_127361_010 Hb_005054_140--Hb_055002_010 Hb_000959_380 Hb_000959_380 Hb_005054_140--Hb_000959_380 Hb_018283_010--Hb_080126_010 Hb_018283_010--Hb_127361_010 Hb_018283_010--Hb_055002_010 Hb_018283_010--Hb_049490_010 Hb_005352_020 Hb_005352_020 Hb_018283_010--Hb_005352_020 Hb_007524_040 Hb_007524_040 Hb_018283_010--Hb_007524_040 Hb_080126_010--Hb_127361_010 Hb_080126_010--Hb_055002_010 Hb_080126_010--Hb_049490_010 Hb_080126_010--Hb_005352_020 Hb_080126_010--Hb_007524_040 Hb_127361_010--Hb_055002_010 Hb_127361_010--Hb_049490_010 Hb_127361_010--Hb_005352_020 Hb_127361_010--Hb_007524_040 Hb_055002_010--Hb_049490_010 Hb_055002_010--Hb_005352_020 Hb_055002_010--Hb_007524_040 Hb_049490_010--Hb_005352_020 Hb_049490_010--Hb_007524_040 Hb_000917_020 Hb_000917_020 Hb_049490_010--Hb_000917_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0107866 0.731452

CAGE analysis