Hb_000832_350

Information

Type -
Description -
Location Contig832: 294305-294712
Sequence    

Annotation

kegg
ID rcu:RCOM_0190230
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative
nr
ID XP_002531975.1
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T157
description Thylakoid lumenal 25.6 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0190230 PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal kda chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_350 0.0 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_003297_040 0.1740717912 - - Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_006856_020 0.1883391479 - - -
4 Hb_001799_220 0.1925232509 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
5 Hb_030370_010 0.2353425218 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
6 Hb_033908_010 0.2397203928 - - -
7 Hb_001496_140 0.2410953923 - - -
8 Hb_011618_020 0.2427145644 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
9 Hb_002123_030 0.2518883531 - - hypothetical protein VITISV_003767 [Vitis vinifera]
10 Hb_000574_290 0.2522713288 - - PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]
11 Hb_002387_030 0.2563787878 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042083_020 0.2564335554 - - -
13 Hb_007622_010 0.2564556616 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
14 Hb_002110_220 0.2565834627 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003940_060 0.2571274498 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
16 Hb_029695_040 0.2573649753 - - Pectate lyase precursor, putative [Ricinus communis]
17 Hb_001234_090 0.2574453785 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
18 Hb_186634_010 0.2581429236 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_118909_010 0.2584177647 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
20 Hb_007810_080 0.2585557643 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]

Gene co-expression network

sample Hb_000832_350 Hb_000832_350 Hb_003297_040 Hb_003297_040 Hb_000832_350--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_000832_350--Hb_006856_020 Hb_001799_220 Hb_001799_220 Hb_000832_350--Hb_001799_220 Hb_030370_010 Hb_030370_010 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001496_140 Hb_001496_140 Hb_000832_350--Hb_001496_140 Hb_003297_040--Hb_006856_020 Hb_001496_020 Hb_001496_020 Hb_003297_040--Hb_001496_020 Hb_011618_020 Hb_011618_020 Hb_003297_040--Hb_011618_020 Hb_006261_010 Hb_006261_010 Hb_003297_040--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_003297_040--Hb_007757_090 Hb_033286_020 Hb_033286_020 Hb_006856_020--Hb_033286_020 Hb_169514_010 Hb_169514_010 Hb_006856_020--Hb_169514_010 Hb_006856_020--Hb_011618_020 Hb_006856_020--Hb_001496_020 Hb_001799_220--Hb_030370_010 Hb_002123_030 Hb_002123_030 Hb_001799_220--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000599_070 Hb_000599_070 Hb_001799_220--Hb_000599_070 Hb_030370_010--Hb_002123_030 Hb_030370_010--Hb_012253_020 Hb_030370_010--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_030370_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_030370_010--Hb_188450_010 Hb_087161_010 Hb_087161_010 Hb_033908_010--Hb_087161_010 Hb_069147_010 Hb_069147_010 Hb_033908_010--Hb_069147_010 Hb_041813_050 Hb_041813_050 Hb_033908_010--Hb_041813_050 Hb_004052_060 Hb_004052_060 Hb_033908_010--Hb_004052_060 Hb_030885_010 Hb_030885_010 Hb_033908_010--Hb_030885_010 Hb_076226_010 Hb_076226_010 Hb_033908_010--Hb_076226_010 Hb_001496_140--Hb_001799_220 Hb_001496_140--Hb_002123_030 Hb_016834_010 Hb_016834_010 Hb_001496_140--Hb_016834_010 Hb_001496_140--Hb_030370_010 Hb_000038_050 Hb_000038_050 Hb_001496_140--Hb_000038_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.617167 0.750476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.00049 5.53958

CAGE analysis