Hb_004052_060

Information

Type transcription factor
Description TF Family: TCP
Location Contig4052: 67936-68988
Sequence    

Annotation

kegg
ID rcu:RCOM_1469470
description transcription factor, putative
nr
ID XP_002514641.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FME3
description Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=2 SV=1
trembl
ID B9RLM2
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1469470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40185: 67510-67969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_060 0.0 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
2 Hb_009848_060 0.1506162219 - - unknown [Glycine max]
3 Hb_125116_020 0.1639210347 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
4 Hb_095835_010 0.1657413952 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
5 Hb_010129_020 0.1675931386 - - cytochrome P450, putative [Ricinus communis]
6 Hb_005843_060 0.1758162721 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
7 Hb_029727_010 0.1789896396 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000260_730 0.1798342047 - - -
9 Hb_002529_070 0.1817273307 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
10 Hb_069147_010 0.1859420964 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
11 Hb_004487_060 0.1860640534 - - cytochrome P450, putative [Ricinus communis]
12 Hb_030885_010 0.1873195722 - - -
13 Hb_002016_130 0.1888118611 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
14 Hb_001005_040 0.1969796681 - - -
15 Hb_003462_170 0.2025242719 - - unnamed protein product [Vitis vinifera]
16 Hb_087161_010 0.2058836784 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000169_100 0.2063418699 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
18 Hb_001288_050 0.2069158385 - - -
19 Hb_001571_020 0.2083026094 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
20 Hb_001856_280 0.208922361 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_004052_060 Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_004052_060--Hb_009848_060 Hb_125116_020 Hb_125116_020 Hb_004052_060--Hb_125116_020 Hb_095835_010 Hb_095835_010 Hb_004052_060--Hb_095835_010 Hb_010129_020 Hb_010129_020 Hb_004052_060--Hb_010129_020 Hb_005843_060 Hb_005843_060 Hb_004052_060--Hb_005843_060 Hb_029727_010 Hb_029727_010 Hb_004052_060--Hb_029727_010 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_125116_020--Hb_005843_060 Hb_003462_170 Hb_003462_170 Hb_125116_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_125116_020--Hb_010964_030 Hb_001981_020 Hb_001981_020 Hb_125116_020--Hb_001981_020 Hb_167457_010 Hb_167457_010 Hb_125116_020--Hb_167457_010 Hb_128531_010 Hb_128531_010 Hb_095835_010--Hb_128531_010 Hb_010810_070 Hb_010810_070 Hb_095835_010--Hb_010810_070 Hb_000920_070 Hb_000920_070 Hb_095835_010--Hb_000920_070 Hb_155556_010 Hb_155556_010 Hb_095835_010--Hb_155556_010 Hb_005439_010 Hb_005439_010 Hb_095835_010--Hb_005439_010 Hb_188163_010 Hb_188163_010 Hb_010129_020--Hb_188163_010 Hb_004129_180 Hb_004129_180 Hb_010129_020--Hb_004129_180 Hb_097933_010 Hb_097933_010 Hb_010129_020--Hb_097933_010 Hb_000906_120 Hb_000906_120 Hb_010129_020--Hb_000906_120 Hb_001880_020 Hb_001880_020 Hb_010129_020--Hb_001880_020 Hb_002188_050 Hb_002188_050 Hb_010129_020--Hb_002188_050 Hb_016835_020 Hb_016835_020 Hb_005843_060--Hb_016835_020 Hb_005843_060--Hb_003462_170 Hb_005843_060--Hb_167457_010 Hb_003186_050 Hb_003186_050 Hb_005843_060--Hb_003186_050 Hb_005843_060--Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0554043 0.207367 0.281328 0.0208362 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0373904 0.138097 1.84725 3.22416

CAGE analysis