Hb_009848_050

Information

Type -
Description -
Location Contig9848: 82126-83675
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_010927303.1
description PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
swissprot
ID Q9XI96
description Proline-rich receptor-like protein kinase PERK7 OS=Arabidopsis thaliana GN=PERK7 PE=2 SV=1
trembl
ID M0Z389
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_050 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
2 Hb_009848_060 0.1506233811 - - unknown [Glycine max]
3 Hb_010490_060 0.1657642002 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
4 Hb_185058_020 0.1691951827 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_014324_010 0.1965704212 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
6 Hb_000137_060 0.1975457971 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
7 Hb_001571_020 0.1997232341 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
8 Hb_087161_010 0.2092480517 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000465_180 0.2097262689 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
10 Hb_004520_010 0.2115629933 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_008144_010 0.2129111205 - - hypothetical protein VITISV_015004 [Vitis vinifera]
12 Hb_000574_030 0.2134461697 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_000260_730 0.2165672485 - - -
14 Hb_069147_010 0.2177860615 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
15 Hb_009230_020 0.2186324023 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
16 Hb_000442_170 0.2199369939 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_097021_010 0.2238126698 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
18 Hb_004052_060 0.2246692247 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
19 Hb_007130_010 0.2252537846 - - -
20 Hb_001288_050 0.2272489968 - - -

Gene co-expression network

sample Hb_009848_050 Hb_009848_050 Hb_009848_060 Hb_009848_060 Hb_009848_050--Hb_009848_060 Hb_010490_060 Hb_010490_060 Hb_009848_050--Hb_010490_060 Hb_185058_020 Hb_185058_020 Hb_009848_050--Hb_185058_020 Hb_014324_010 Hb_014324_010 Hb_009848_050--Hb_014324_010 Hb_000137_060 Hb_000137_060 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_004052_060 Hb_004052_060 Hb_009848_060--Hb_004052_060 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_000442_170 Hb_000442_170 Hb_010490_060--Hb_000442_170 Hb_004520_010 Hb_004520_010 Hb_010490_060--Hb_004520_010 Hb_010490_060--Hb_000137_060 Hb_010490_060--Hb_000260_730 Hb_002888_060 Hb_002888_060 Hb_010490_060--Hb_002888_060 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010 Hb_001096_020 Hb_001096_020 Hb_014324_010--Hb_001096_020 Hb_049365_010 Hb_049365_010 Hb_014324_010--Hb_049365_010 Hb_008033_060 Hb_008033_060 Hb_014324_010--Hb_008033_060 Hb_097021_010 Hb_097021_010 Hb_014324_010--Hb_097021_010 Hb_142570_010 Hb_142570_010 Hb_014324_010--Hb_142570_010 Hb_000465_180 Hb_000465_180 Hb_000137_060--Hb_000465_180 Hb_001288_050 Hb_001288_050 Hb_000137_060--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_000137_060--Hb_000567_150 Hb_000137_060--Hb_001571_020 Hb_001005_040 Hb_001005_040 Hb_000137_060--Hb_001005_040 Hb_007130_010 Hb_007130_010 Hb_000137_060--Hb_007130_010 Hb_008144_010 Hb_008144_010 Hb_001571_020--Hb_008144_010 Hb_001571_020--Hb_001288_050 Hb_001597_090 Hb_001597_090 Hb_001571_020--Hb_001597_090 Hb_001571_020--Hb_001005_040 Hb_001571_020--Hb_000465_180 Hb_009230_020 Hb_009230_020 Hb_001571_020--Hb_009230_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147856 0.517339 0.450759 0.229984 0.0296984 0.0620862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.290201 2.64283 3.00559

CAGE analysis