Hb_069147_010

Information

Type desease resistance
Description Gene Name: zf-BED
Location Contig69147: 938-1884
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12480g
description hypothetical protein
nr
ID XP_011029423.1
description PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
swissprot
ID Q8L3R3
description Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2
trembl
ID U5FWH4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12480g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069147_010 0.0 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
2 Hb_004052_060 0.1859420964 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
3 Hb_009848_060 0.1861247104 - - unknown [Glycine max]
4 Hb_000414_180 0.1911691477 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
5 Hb_185058_020 0.1996448189 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
6 Hb_041813_050 0.2037253842 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
7 Hb_044380_020 0.2074506708 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_060658_010 0.2099087801 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_087161_010 0.2142626682 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_049365_010 0.2151650369 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
11 Hb_005288_060 0.2171304933 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
12 Hb_009848_050 0.2177860615 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
13 Hb_003186_040 0.2180083409 - - PREDICTED: protein DENND6A [Jatropha curcas]
14 Hb_001811_080 0.221859355 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_030885_010 0.2238834141 - - -
16 Hb_001085_210 0.2247337245 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
17 Hb_076226_010 0.2250844889 - - hypothetical protein VITISV_030432 [Vitis vinifera]
18 Hb_010490_060 0.2273100062 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
19 Hb_004021_020 0.2273176503 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
20 Hb_033908_010 0.2278170063 - - -

Gene co-expression network

sample Hb_069147_010 Hb_069147_010 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_069147_010--Hb_009848_060 Hb_000414_180 Hb_000414_180 Hb_069147_010--Hb_000414_180 Hb_185058_020 Hb_185058_020 Hb_069147_010--Hb_185058_020 Hb_041813_050 Hb_041813_050 Hb_069147_010--Hb_041813_050 Hb_044380_020 Hb_044380_020 Hb_069147_010--Hb_044380_020 Hb_004052_060--Hb_009848_060 Hb_125116_020 Hb_125116_020 Hb_004052_060--Hb_125116_020 Hb_095835_010 Hb_095835_010 Hb_004052_060--Hb_095835_010 Hb_010129_020 Hb_010129_020 Hb_004052_060--Hb_010129_020 Hb_005843_060 Hb_005843_060 Hb_004052_060--Hb_005843_060 Hb_029727_010 Hb_029727_010 Hb_004052_060--Hb_029727_010 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_005288_060 Hb_005288_060 Hb_000414_180--Hb_005288_060 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000454_160 Hb_000454_160 Hb_000414_180--Hb_000454_160 Hb_185058_020--Hb_009848_050 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_185058_020--Hb_041813_050 Hb_185058_020--Hb_009848_060 Hb_062192_060 Hb_062192_060 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_001086_030 Hb_001086_030 Hb_044380_020--Hb_001086_030 Hb_000875_070 Hb_000875_070 Hb_044380_020--Hb_000875_070 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_006452_240 Hb_006452_240 Hb_044380_020--Hb_006452_240 Hb_003938_110 Hb_003938_110 Hb_044380_020--Hb_003938_110 Hb_044380_020--Hb_000414_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.208797 0.169734 0.359419 0.0245905 0.223043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0562063 0.132607 0.323574 1.97732 3.14517

CAGE analysis