Hb_003938_110

Information

Type -
Description -
Location Contig3938: 114392-116272
Sequence    

Annotation

kegg
ID osa:4345730
description Os08g0451600
nr
ID ACB28472.1
description polyprotein [Ananas comosus]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID B4YF15
description Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_110 0.0 - - polyprotein [Ananas comosus]
2 Hb_000875_070 0.185354187 - - -
3 Hb_008511_140 0.1896946015 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
4 Hb_012404_080 0.1922203691 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
5 Hb_002311_260 0.1994599638 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
6 Hb_009296_050 0.1999112846 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
7 Hb_044380_020 0.2061701185 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_060658_010 0.2094953559 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_001080_150 0.2159387048 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
10 Hb_000731_290 0.2178222335 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_001080_030 0.2211238848 - - AMP dependent ligase, putative [Ricinus communis]
12 Hb_011609_210 0.2218181473 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
13 Hb_000454_160 0.2240462384 - - amidophosphoribosyltransferase, putative [Ricinus communis]
14 Hb_001793_030 0.2262004638 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
15 Hb_007546_030 0.2272290491 - - transcription cofactor, putative [Ricinus communis]
16 Hb_052946_010 0.2281280927 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
17 Hb_000019_010 0.2297798454 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
18 Hb_065500_010 0.22991324 - - -
19 Hb_000414_180 0.2318759395 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
20 Hb_000392_160 0.23225635 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003938_110 Hb_003938_110 Hb_000875_070 Hb_000875_070 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_012404_080 Hb_012404_080 Hb_003938_110--Hb_012404_080 Hb_002311_260 Hb_002311_260 Hb_003938_110--Hb_002311_260 Hb_009296_050 Hb_009296_050 Hb_003938_110--Hb_009296_050 Hb_044380_020 Hb_044380_020 Hb_003938_110--Hb_044380_020 Hb_001304_130 Hb_001304_130 Hb_000875_070--Hb_001304_130 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_147218_010 Hb_147218_010 Hb_000875_070--Hb_147218_010 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_000875_070--Hb_044380_020 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040 Hb_052946_010 Hb_052946_010 Hb_008511_140--Hb_052946_010 Hb_000529_140 Hb_000529_140 Hb_008511_140--Hb_000529_140 Hb_000495_080 Hb_000495_080 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_001080_030 Hb_001080_030 Hb_008511_140--Hb_001080_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_011609_210 Hb_011609_210 Hb_012404_080--Hb_011609_210 Hb_000454_160 Hb_000454_160 Hb_012404_080--Hb_000454_160 Hb_012404_080--Hb_001080_030 Hb_000977_150 Hb_000977_150 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_060658_010 Hb_060658_010 Hb_002311_260--Hb_060658_010 Hb_182651_020 Hb_182651_020 Hb_002311_260--Hb_182651_020 Hb_002311_260--Hb_000019_010 Hb_001737_040 Hb_001737_040 Hb_002311_260--Hb_001737_040 Hb_000366_030 Hb_000366_030 Hb_002311_260--Hb_000366_030 Hb_065500_010 Hb_065500_010 Hb_009296_050--Hb_065500_010 Hb_004319_060 Hb_004319_060 Hb_009296_050--Hb_004319_060 Hb_009296_050--Hb_012404_080 Hb_012788_010 Hb_012788_010 Hb_009296_050--Hb_012788_010 Hb_121992_010 Hb_121992_010 Hb_009296_050--Hb_121992_010 Hb_001086_030 Hb_001086_030 Hb_044380_020--Hb_001086_030 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_006452_240 Hb_006452_240 Hb_044380_020--Hb_006452_240 Hb_000414_180 Hb_000414_180 Hb_044380_020--Hb_000414_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.047093 0.362139 0.00874866 0.390395 0.0779352 0.136119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535761 0.189687 0.0795731 0.604697 1.19669

CAGE analysis