Hb_012788_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12788: 4-4888
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O22727
description Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at1g61190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012788_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_121992_010 0.1376109679 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
3 Hb_136880_010 0.1676744728 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_001304_130 0.1691767509 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
5 Hb_001485_010 0.1795102729 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_134279_010 0.1879807874 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
7 Hb_053125_010 0.1892880062 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
8 Hb_147218_010 0.1902943556 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_009296_050 0.2040675479 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
10 Hb_000141_010 0.2051036944 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
11 Hb_102011_010 0.2068209331 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_065500_010 0.2133443127 - - -
13 Hb_167977_010 0.2141163014 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
14 Hb_006916_190 0.2189019253 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000679_210 0.2228078736 - - grr1, plant, putative [Ricinus communis]
16 Hb_007546_030 0.2244171009 - - transcription cofactor, putative [Ricinus communis]
17 Hb_000866_110 0.2290422761 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
18 Hb_000875_070 0.2300402593 - - -
19 Hb_000022_140 0.2305067969 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
20 Hb_000589_380 0.2309611575 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012788_010 Hb_012788_010 Hb_121992_010 Hb_121992_010 Hb_012788_010--Hb_121992_010 Hb_136880_010 Hb_136880_010 Hb_012788_010--Hb_136880_010 Hb_001304_130 Hb_001304_130 Hb_012788_010--Hb_001304_130 Hb_001485_010 Hb_001485_010 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_053125_010 Hb_053125_010 Hb_012788_010--Hb_053125_010 Hb_121992_010--Hb_001304_130 Hb_121992_010--Hb_136880_010 Hb_147218_010 Hb_147218_010 Hb_121992_010--Hb_147218_010 Hb_086336_010 Hb_086336_010 Hb_121992_010--Hb_086336_010 Hb_121992_010--Hb_001485_010 Hb_136880_010--Hb_001485_010 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_151706_010 Hb_151706_010 Hb_136880_010--Hb_151706_010 Hb_001304_130--Hb_147218_010 Hb_000875_070 Hb_000875_070 Hb_001304_130--Hb_000875_070 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001486_060 Hb_001486_060 Hb_001304_130--Hb_001486_060 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_001485_010--Hb_053125_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010 Hb_003895_040 Hb_003895_040 Hb_134279_010--Hb_003895_040 Hb_000679_210 Hb_000679_210 Hb_134279_010--Hb_000679_210 Hb_015183_080 Hb_015183_080 Hb_134279_010--Hb_015183_080 Hb_014497_020 Hb_014497_020 Hb_134279_010--Hb_014497_020 Hb_000512_030 Hb_000512_030 Hb_134279_010--Hb_000512_030 Hb_003604_030 Hb_003604_030 Hb_134279_010--Hb_003604_030 Hb_053125_010--Hb_102011_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_053125_010--Hb_151706_010 Hb_053125_010--Hb_147218_010 Hb_053125_010--Hb_065500_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580345 5.62895 0.599178 2.72753 0.561545 2.14329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0697947 0.0137302 3.03701 7.45813 6.30562

CAGE analysis