Hb_000875_070

Information

Type -
Description -
Location Contig875: 165144-167744
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61248: 165239-167448 , PASA_asmbl_61249: 166919-167180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000875_070 0.0 - - -
2 Hb_001304_130 0.1412381223 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
3 Hb_002518_180 0.1521324544 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
4 Hb_147218_010 0.1522094273 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_000019_010 0.1526703127 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
6 Hb_044380_020 0.1541121905 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_005217_040 0.155681983 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
8 Hb_000668_110 0.1569218758 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
9 Hb_011032_010 0.1575036987 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_000337_010 0.1598396051 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
11 Hb_001677_230 0.1602381053 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_002026_070 0.1756796701 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
13 Hb_053575_020 0.1769997815 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
14 Hb_033594_100 0.1782635355 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_085187_010 0.1789931668 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_011853_010 0.1791047258 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_003125_180 0.1793806482 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
18 Hb_065500_010 0.1810942643 - - -
19 Hb_000922_260 0.1811148681 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
20 Hb_010068_050 0.1838002747 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]

Gene co-expression network

sample Hb_000875_070 Hb_000875_070 Hb_001304_130 Hb_001304_130 Hb_000875_070--Hb_001304_130 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_147218_010 Hb_147218_010 Hb_000875_070--Hb_147218_010 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_044380_020 Hb_044380_020 Hb_000875_070--Hb_044380_020 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040 Hb_001304_130--Hb_147218_010 Hb_121992_010 Hb_121992_010 Hb_001304_130--Hb_121992_010 Hb_086336_010 Hb_086336_010 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001486_060 Hb_001486_060 Hb_001304_130--Hb_001486_060 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_147218_010--Hb_121992_010 Hb_147218_010--Hb_001486_060 Hb_029879_120 Hb_029879_120 Hb_000019_010--Hb_029879_120 Hb_011174_080 Hb_011174_080 Hb_000019_010--Hb_011174_080 Hb_003125_180 Hb_003125_180 Hb_000019_010--Hb_003125_180 Hb_001702_050 Hb_001702_050 Hb_000019_010--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000019_010--Hb_001235_130 Hb_003490_050 Hb_003490_050 Hb_000019_010--Hb_003490_050 Hb_001086_030 Hb_001086_030 Hb_044380_020--Hb_001086_030 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_006452_240 Hb_006452_240 Hb_044380_020--Hb_006452_240 Hb_003938_110 Hb_003938_110 Hb_044380_020--Hb_003938_110 Hb_000414_180 Hb_000414_180 Hb_044380_020--Hb_000414_180 Hb_005217_040--Hb_011032_010 Hb_005217_040--Hb_003125_180 Hb_053575_020 Hb_053575_020 Hb_005217_040--Hb_053575_020 Hb_065500_010 Hb_065500_010 Hb_005217_040--Hb_065500_010 Hb_000019_170 Hb_000019_170 Hb_005217_040--Hb_000019_170 Hb_169051_010 Hb_169051_010 Hb_005217_040--Hb_169051_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.284921 0.909483 0.232382 1.40317 0.258732 0.399492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.076783 0.181098 0.216329 2.57481 2.39866

CAGE analysis