Hb_003216_070

Information

Type -
Description -
Location Contig3216: 74616-75586
Sequence    

Annotation

kegg
ID rcu:RCOM_0483300
description hypothetical protein
nr
ID XP_002531695.1
description hypothetical protein RCOM_0483300 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0C6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0483300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34001: 56656-104131 , PASA_asmbl_34006: 76040-78486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003216_070 0.0 - - hypothetical protein RCOM_0483300 [Ricinus communis]
2 Hb_001304_130 0.1579565939 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
3 Hb_000979_160 0.173467523 - - hypothetical protein RCOM_0629030 [Ricinus communis]
4 Hb_001252_190 0.185065496 desease resistance Gene Name: NB-ARC -
5 Hb_147218_010 0.191040082 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_001486_060 0.1944236514 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
7 Hb_005054_170 0.1947672151 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
8 Hb_000028_340 0.1949921227 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
9 Hb_000818_080 0.1983077761 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
10 Hb_013749_060 0.2017448422 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
11 Hb_009535_030 0.2034425449 - - CP2 [Hevea brasiliensis]
12 Hb_000540_040 0.2043127742 - - PREDICTED: chitinase 2 [Amborella trichopoda]
13 Hb_096998_010 0.2070844456 - - hypothetical protein JCGZ_07944 [Jatropha curcas]
14 Hb_065500_010 0.2116661799 - - -
15 Hb_168180_010 0.2124457874 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002518_180 0.21247913 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
17 Hb_121992_010 0.2134300367 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
18 Hb_019654_110 0.2135615219 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
19 Hb_012565_040 0.2162452109 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_000959_120 0.216468344 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003216_070 Hb_003216_070 Hb_001304_130 Hb_001304_130 Hb_003216_070--Hb_001304_130 Hb_000979_160 Hb_000979_160 Hb_003216_070--Hb_000979_160 Hb_001252_190 Hb_001252_190 Hb_003216_070--Hb_001252_190 Hb_147218_010 Hb_147218_010 Hb_003216_070--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_003216_070--Hb_001486_060 Hb_005054_170 Hb_005054_170 Hb_003216_070--Hb_005054_170 Hb_001304_130--Hb_147218_010 Hb_121992_010 Hb_121992_010 Hb_001304_130--Hb_121992_010 Hb_000875_070 Hb_000875_070 Hb_001304_130--Hb_000875_070 Hb_086336_010 Hb_086336_010 Hb_001304_130--Hb_086336_010 Hb_001304_130--Hb_001486_060 Hb_001976_020 Hb_001976_020 Hb_000979_160--Hb_001976_020 Hb_000959_120 Hb_000959_120 Hb_000979_160--Hb_000959_120 Hb_007027_010 Hb_007027_010 Hb_000979_160--Hb_007027_010 Hb_002097_080 Hb_002097_080 Hb_000979_160--Hb_002097_080 Hb_001247_270 Hb_001247_270 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080 Hb_096998_010 Hb_096998_010 Hb_001252_190--Hb_096998_010 Hb_002026_080 Hb_002026_080 Hb_001252_190--Hb_002026_080 Hb_001252_190--Hb_147218_010 Hb_140012_010 Hb_140012_010 Hb_001252_190--Hb_140012_010 Hb_001252_190--Hb_001304_130 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_147218_010--Hb_000875_070 Hb_147218_010--Hb_121992_010 Hb_147218_010--Hb_001486_060 Hb_000818_080 Hb_000818_080 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_001486_060--Hb_086336_010 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_000062_640 Hb_000062_640 Hb_005054_170--Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_005054_170--Hb_000028_340 Hb_002027_170 Hb_002027_170 Hb_005054_170--Hb_002027_170 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_000056_280 Hb_000056_280 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.688477 4.99822 0.14755 7.84282 0.0820003 1.08294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.824796 0.485907 1.2889 6.33794 5.09302

CAGE analysis