Hb_096998_010

Information

Type -
Description -
Location Contig96998: 130-1191
Sequence    

Annotation

kegg
ID rcu:RCOM_0287640
description Potassium channel SKOR, putative (EC:3.1.1.5)
nr
ID KDP37417.1
description hypothetical protein JCGZ_07944 [Jatropha curcas]
swissprot
ID Q653P0
description Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1
trembl
ID A0A067KMR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07944 PE=4 SV=1
Gene Ontology
ID GO:0004622
description potassium channel skor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096998_010 0.0 - - hypothetical protein JCGZ_07944 [Jatropha curcas]
2 Hb_001252_190 0.1752125451 desease resistance Gene Name: NB-ARC -
3 Hb_000540_100 0.1946119186 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
4 Hb_006469_070 0.1959703664 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
5 Hb_000028_340 0.1962925612 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
6 Hb_000649_120 0.2059966895 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_003216_070 0.2070844456 - - hypothetical protein RCOM_0483300 [Ricinus communis]
8 Hb_030565_110 0.214573468 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
9 Hb_140012_010 0.2169469091 - - PREDICTED: putative disease resistance protein RGA3 [Eucalyptus grandis]
10 Hb_001105_130 0.2171829957 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
11 Hb_147218_010 0.2192205928 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_001366_270 0.2196237215 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
13 Hb_009535_030 0.2208970435 - - CP2 [Hevea brasiliensis]
14 Hb_012707_040 0.2209357844 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
15 Hb_001404_080 0.221746528 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000000_120 0.2219479981 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
17 Hb_146510_010 0.2244594114 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
18 Hb_004094_020 0.2247798115 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
19 Hb_008468_030 0.2259548338 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_004030_060 0.2264383817 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_096998_010 Hb_096998_010 Hb_001252_190 Hb_001252_190 Hb_096998_010--Hb_001252_190 Hb_000540_100 Hb_000540_100 Hb_096998_010--Hb_000540_100 Hb_006469_070 Hb_006469_070 Hb_096998_010--Hb_006469_070 Hb_000028_340 Hb_000028_340 Hb_096998_010--Hb_000028_340 Hb_000649_120 Hb_000649_120 Hb_096998_010--Hb_000649_120 Hb_003216_070 Hb_003216_070 Hb_096998_010--Hb_003216_070 Hb_001252_190--Hb_003216_070 Hb_002026_080 Hb_002026_080 Hb_001252_190--Hb_002026_080 Hb_147218_010 Hb_147218_010 Hb_001252_190--Hb_147218_010 Hb_140012_010 Hb_140012_010 Hb_001252_190--Hb_140012_010 Hb_001304_130 Hb_001304_130 Hb_001252_190--Hb_001304_130 Hb_001366_270 Hb_001366_270 Hb_000540_100--Hb_001366_270 Hb_004030_060 Hb_004030_060 Hb_000540_100--Hb_004030_060 Hb_002311_130 Hb_002311_130 Hb_000540_100--Hb_002311_130 Hb_001702_050 Hb_001702_050 Hb_000540_100--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000540_100--Hb_001235_130 Hb_001811_170 Hb_001811_170 Hb_000540_100--Hb_001811_170 Hb_002046_060 Hb_002046_060 Hb_006469_070--Hb_002046_060 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_000062_640 Hb_000062_640 Hb_000028_340--Hb_000062_640 Hb_000056_280 Hb_000056_280 Hb_000028_340--Hb_000056_280 Hb_003470_050 Hb_003470_050 Hb_000028_340--Hb_003470_050 Hb_000028_340--Hb_000649_120 Hb_000028_340--Hb_006469_070 Hb_008468_030 Hb_008468_030 Hb_000028_340--Hb_008468_030 Hb_002235_310 Hb_002235_310 Hb_000649_120--Hb_002235_310 Hb_000072_020 Hb_000072_020 Hb_000649_120--Hb_000072_020 Hb_000866_110 Hb_000866_110 Hb_000649_120--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_003216_070--Hb_001304_130 Hb_000979_160 Hb_000979_160 Hb_003216_070--Hb_000979_160 Hb_003216_070--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_003216_070--Hb_001486_060 Hb_005054_170 Hb_005054_170 Hb_003216_070--Hb_005054_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.85012 3.92505 1.40616 7.22749 0 2.39267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58802 0 1.2673 4.89877 3.46376

CAGE analysis