Hb_140012_010

Information

Type -
Description -
Location Contig140012: 2-1027
Sequence    

Annotation

kegg
ID egr:104447167
description putative disease resistance protein RGA3
nr
ID XP_010059239.1
description PREDICTED: putative disease resistance protein RGA3 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A061F727
description Leucine-rich repeat containing protein OS=Theobroma cacao GN=TCM_031013 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140012_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Eucalyptus grandis]
2 Hb_183867_010 0.1894837411 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
3 Hb_001497_060 0.1963944453 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
4 Hb_002153_030 0.1978680611 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
5 Hb_002524_030 0.1978730048 - - -
6 Hb_000209_100 0.1989181535 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
7 Hb_000723_010 0.2009134377 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_007472_080 0.2009222066 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
9 Hb_001780_150 0.2012689701 - - ceramidase, putative [Ricinus communis]
10 Hb_000094_370 0.2016218858 - - -
11 Hb_002213_090 0.2024640659 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
12 Hb_003607_060 0.2026115122 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
13 Hb_005914_140 0.2029370959 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
14 Hb_000155_110 0.2039125375 - - Auxin response factor, putative [Ricinus communis]
15 Hb_003626_050 0.2047707267 - - malic enzyme, putative [Ricinus communis]
16 Hb_011287_010 0.2049532393 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_005081_020 0.204968144 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
18 Hb_000540_100 0.2061065265 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
19 Hb_004094_020 0.2063496419 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
20 Hb_000866_110 0.2071652759 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_140012_010 Hb_140012_010 Hb_183867_010 Hb_183867_010 Hb_140012_010--Hb_183867_010 Hb_001497_060 Hb_001497_060 Hb_140012_010--Hb_001497_060 Hb_002153_030 Hb_002153_030 Hb_140012_010--Hb_002153_030 Hb_002524_030 Hb_002524_030 Hb_140012_010--Hb_002524_030 Hb_000209_100 Hb_000209_100 Hb_140012_010--Hb_000209_100 Hb_000723_010 Hb_000723_010 Hb_140012_010--Hb_000723_010 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_013358_050 Hb_013358_050 Hb_183867_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_183867_010--Hb_132101_010 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_022092_010 Hb_022092_010 Hb_183867_010--Hb_022092_010 Hb_000334_260 Hb_000334_260 Hb_001497_060--Hb_000334_260 Hb_075315_010 Hb_075315_010 Hb_001497_060--Hb_075315_010 Hb_001497_060--Hb_000723_010 Hb_001160_070 Hb_001160_070 Hb_001497_060--Hb_001160_070 Hb_004837_280 Hb_004837_280 Hb_001497_060--Hb_004837_280 Hb_001497_060--Hb_013358_050 Hb_002631_200 Hb_002631_200 Hb_002153_030--Hb_002631_200 Hb_007904_130 Hb_007904_130 Hb_002153_030--Hb_007904_130 Hb_002391_210 Hb_002391_210 Hb_002153_030--Hb_002391_210 Hb_001170_030 Hb_001170_030 Hb_002153_030--Hb_001170_030 Hb_000402_190 Hb_000402_190 Hb_002153_030--Hb_000402_190 Hb_005081_020 Hb_005081_020 Hb_002153_030--Hb_005081_020 Hb_000661_260 Hb_000661_260 Hb_002524_030--Hb_000661_260 Hb_000735_070 Hb_000735_070 Hb_002524_030--Hb_000735_070 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002524_030--Hb_002153_030 Hb_003517_020 Hb_003517_020 Hb_002524_030--Hb_003517_020 Hb_001322_180 Hb_001322_180 Hb_002524_030--Hb_001322_180 Hb_001642_070 Hb_001642_070 Hb_000209_100--Hb_001642_070 Hb_006916_110 Hb_006916_110 Hb_000209_100--Hb_006916_110 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_005074_020 Hb_005074_020 Hb_000209_100--Hb_005074_020 Hb_016347_010 Hb_016347_010 Hb_000209_100--Hb_016347_010 Hb_069619_010 Hb_069619_010 Hb_000723_010--Hb_069619_010 Hb_000674_010 Hb_000674_010 Hb_000723_010--Hb_000674_010 Hb_003058_200 Hb_003058_200 Hb_000723_010--Hb_003058_200 Hb_000723_010--Hb_075315_010 Hb_020805_180 Hb_020805_180 Hb_000723_010--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65389 0.950588 0.29808 1.33058 0 0.809698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392693 0.308859 0.355902 2.34296 0.949492

CAGE analysis