Hb_069619_010

Information

Type -
Description -
Location Contig69619: 780-5891
Sequence    

Annotation

kegg
ID rcu:RCOM_1225960
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID XP_002524837.1
description Aspartic proteinase precursor, putative [Ricinus communis]
swissprot
ID O65390
description Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1
trembl
ID B9SFR8
description Aspartic proteinase, putative OS=Ricinus communis GN=RCOM_1225960 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54619: 1070-2695 , PASA_asmbl_54620: 2736-3134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069619_010 0.0 - - Aspartic proteinase precursor, putative [Ricinus communis]
2 Hb_000723_010 0.087209692 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_002851_010 0.1008856082 - - sugar transporter, putative [Ricinus communis]
4 Hb_003058_200 0.1021798293 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
5 Hb_000152_700 0.1034372636 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
6 Hb_000674_010 0.1068047716 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
7 Hb_004094_020 0.1085015257 - - Pyruvate kinase family protein isoform 1 [Theobroma cacao]
8 Hb_001497_060 0.1098018863 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
9 Hb_075315_010 0.1105354893 - - ornithine aminotransferase [Camellia sinensis]
10 Hb_000649_060 0.1114945234 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
11 Hb_013358_050 0.1128500659 - - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative [Ricinus communis]
12 Hb_002072_010 0.1132005516 - - conserved hypothetical protein [Ricinus communis]
13 Hb_135959_010 0.1145142002 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
14 Hb_007747_170 0.1149131261 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
15 Hb_183867_010 0.1160851962 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
16 Hb_004450_070 0.1165984346 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
17 Hb_020805_180 0.118061044 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
18 Hb_000334_260 0.1221496794 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
19 Hb_000157_070 0.1222609438 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
20 Hb_002213_090 0.1225898812 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]

Gene co-expression network

sample Hb_069619_010 Hb_069619_010 Hb_000723_010 Hb_000723_010 Hb_069619_010--Hb_000723_010 Hb_002851_010 Hb_002851_010 Hb_069619_010--Hb_002851_010 Hb_003058_200 Hb_003058_200 Hb_069619_010--Hb_003058_200 Hb_000152_700 Hb_000152_700 Hb_069619_010--Hb_000152_700 Hb_000674_010 Hb_000674_010 Hb_069619_010--Hb_000674_010 Hb_004094_020 Hb_004094_020 Hb_069619_010--Hb_004094_020 Hb_001497_060 Hb_001497_060 Hb_000723_010--Hb_001497_060 Hb_000723_010--Hb_000674_010 Hb_000723_010--Hb_003058_200 Hb_075315_010 Hb_075315_010 Hb_000723_010--Hb_075315_010 Hb_020805_180 Hb_020805_180 Hb_000723_010--Hb_020805_180 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060 Hb_002851_010--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_003058_200--Hb_002072_010 Hb_003058_200--Hb_000674_010 Hb_000019_170 Hb_000019_170 Hb_003058_200--Hb_000019_170 Hb_021297_020 Hb_021297_020 Hb_003058_200--Hb_021297_020 Hb_003125_180 Hb_003125_180 Hb_003058_200--Hb_003125_180 Hb_004450_070 Hb_004450_070 Hb_000152_700--Hb_004450_070 Hb_000152_700--Hb_000649_060 Hb_000342_050 Hb_000342_050 Hb_000152_700--Hb_000342_050 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_001226_130 Hb_001226_130 Hb_000152_700--Hb_001226_130 Hb_000152_700--Hb_020805_180 Hb_000674_010--Hb_003125_180 Hb_000674_010--Hb_002072_010 Hb_000674_010--Hb_021297_020 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_183867_010 Hb_183867_010 Hb_004094_020--Hb_183867_010 Hb_135757_020 Hb_135757_020 Hb_004094_020--Hb_135757_020 Hb_005914_140 Hb_005914_140 Hb_004094_020--Hb_005914_140 Hb_000494_030 Hb_000494_030 Hb_004094_020--Hb_000494_030 Hb_001006_270 Hb_001006_270 Hb_004094_020--Hb_001006_270 Hb_003994_220 Hb_003994_220 Hb_004094_020--Hb_003994_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.6657 147.182 94.9839 304.253 94.2203 101.858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.9246 24.6135 70.9159 366.646 150.396

CAGE analysis