Hb_001252_190

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1252: 231817-234368
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_190 0.0 desease resistance Gene Name: NB-ARC -
2 Hb_096998_010 0.1752125451 - - hypothetical protein JCGZ_07944 [Jatropha curcas]
3 Hb_003216_070 0.185065496 - - hypothetical protein RCOM_0483300 [Ricinus communis]
4 Hb_002026_080 0.2052353003 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
5 Hb_147218_010 0.2081480785 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_140012_010 0.22162793 - - PREDICTED: putative disease resistance protein RGA3 [Eucalyptus grandis]
7 Hb_001304_130 0.225695715 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
8 Hb_020378_010 0.2348944355 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
9 Hb_003607_060 0.2351626772 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
10 Hb_000818_080 0.2356368587 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
11 Hb_001486_060 0.2368579078 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
12 Hb_013749_060 0.2384243393 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
13 Hb_000413_230 0.2441419351 - - thioredoxin h [Hevea brasiliensis]
14 Hb_005181_180 0.2464974293 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000793_040 0.247116771 - - PREDICTED: transcription factor LHW [Jatropha curcas]
16 Hb_000093_150 0.2503786296 - - 6-phosphogluconolactonase, putative [Ricinus communis]
17 Hb_004607_040 0.2514052619 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_053575_020 0.2519335121 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
19 Hb_000702_060 0.2524838494 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000120_230 0.2527273979 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]

Gene co-expression network

sample Hb_001252_190 Hb_001252_190 Hb_096998_010 Hb_096998_010 Hb_001252_190--Hb_096998_010 Hb_003216_070 Hb_003216_070 Hb_001252_190--Hb_003216_070 Hb_002026_080 Hb_002026_080 Hb_001252_190--Hb_002026_080 Hb_147218_010 Hb_147218_010 Hb_001252_190--Hb_147218_010 Hb_140012_010 Hb_140012_010 Hb_001252_190--Hb_140012_010 Hb_001304_130 Hb_001304_130 Hb_001252_190--Hb_001304_130 Hb_000540_100 Hb_000540_100 Hb_096998_010--Hb_000540_100 Hb_006469_070 Hb_006469_070 Hb_096998_010--Hb_006469_070 Hb_000028_340 Hb_000028_340 Hb_096998_010--Hb_000028_340 Hb_000649_120 Hb_000649_120 Hb_096998_010--Hb_000649_120 Hb_096998_010--Hb_003216_070 Hb_003216_070--Hb_001304_130 Hb_000979_160 Hb_000979_160 Hb_003216_070--Hb_000979_160 Hb_003216_070--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_003216_070--Hb_001486_060 Hb_005054_170 Hb_005054_170 Hb_003216_070--Hb_005054_170 Hb_000793_040 Hb_000793_040 Hb_002026_080--Hb_000793_040 Hb_002026_080--Hb_001486_060 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000818_080 Hb_000818_080 Hb_002026_080--Hb_000818_080 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_001493_020 Hb_001493_020 Hb_002026_080--Hb_001493_020 Hb_147218_010--Hb_001304_130 Hb_086336_010 Hb_086336_010 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_000875_070 Hb_000875_070 Hb_147218_010--Hb_000875_070 Hb_121992_010 Hb_121992_010 Hb_147218_010--Hb_121992_010 Hb_147218_010--Hb_001486_060 Hb_183867_010 Hb_183867_010 Hb_140012_010--Hb_183867_010 Hb_001497_060 Hb_001497_060 Hb_140012_010--Hb_001497_060 Hb_002153_030 Hb_002153_030 Hb_140012_010--Hb_002153_030 Hb_002524_030 Hb_002524_030 Hb_140012_010--Hb_002524_030 Hb_000209_100 Hb_000209_100 Hb_140012_010--Hb_000209_100 Hb_000723_010 Hb_000723_010 Hb_140012_010--Hb_000723_010 Hb_001304_130--Hb_121992_010 Hb_001304_130--Hb_000875_070 Hb_001304_130--Hb_086336_010 Hb_001304_130--Hb_001486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0174451 0.130135 0.0110174 0.218661 0 0.0546217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.06393 0 0.04721 0.311261 0.10513

CAGE analysis