Hb_044380_020

Information

Type -
Description -
Location Contig44380: 801-1831
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044380_020 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_001086_030 0.145574075 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_000875_070 0.1541121905 - - -
4 Hb_000668_110 0.1829501127 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
5 Hb_006452_240 0.1864695213 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
6 Hb_003938_110 0.2061701185 - - polyprotein [Ananas comosus]
7 Hb_000414_180 0.2072026804 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
8 Hb_069147_010 0.2074506708 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
9 Hb_010068_050 0.2082570351 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
10 Hb_000022_140 0.2089779918 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
11 Hb_001341_020 0.2090047397 - - Uncharacterised protein [Bordetella pertussis]
12 Hb_085187_010 0.2124375733 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_060658_010 0.2153530132 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_062013_010 0.2156488947 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_000216_030 0.2175334774 - - aldehyde oxidase, putative [Ricinus communis]
16 Hb_001080_150 0.2210412855 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
17 Hb_001677_230 0.2221263172 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_000922_260 0.2239936867 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
19 Hb_000256_110 0.2330707364 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
20 Hb_007546_030 0.2344304028 - - transcription cofactor, putative [Ricinus communis]

Gene co-expression network

sample Hb_044380_020 Hb_044380_020 Hb_001086_030 Hb_001086_030 Hb_044380_020--Hb_001086_030 Hb_000875_070 Hb_000875_070 Hb_044380_020--Hb_000875_070 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_006452_240 Hb_006452_240 Hb_044380_020--Hb_006452_240 Hb_003938_110 Hb_003938_110 Hb_044380_020--Hb_003938_110 Hb_000414_180 Hb_000414_180 Hb_044380_020--Hb_000414_180 Hb_006096_020 Hb_006096_020 Hb_001086_030--Hb_006096_020 Hb_001086_030--Hb_006452_240 Hb_003517_010 Hb_003517_010 Hb_001086_030--Hb_003517_010 Hb_102011_010 Hb_102011_010 Hb_001086_030--Hb_102011_010 Hb_000216_030 Hb_000216_030 Hb_001086_030--Hb_000216_030 Hb_001304_130 Hb_001304_130 Hb_000875_070--Hb_001304_130 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_147218_010 Hb_147218_010 Hb_000875_070--Hb_147218_010 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040 Hb_000922_260 Hb_000922_260 Hb_000668_110--Hb_000922_260 Hb_000256_110 Hb_000256_110 Hb_000668_110--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_000668_110--Hb_002026_070 Hb_003490_050 Hb_003490_050 Hb_000668_110--Hb_003490_050 Hb_003549_050 Hb_003549_050 Hb_000668_110--Hb_003549_050 Hb_011853_010 Hb_011853_010 Hb_000668_110--Hb_011853_010 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_001341_020 Hb_001341_020 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_012404_080 Hb_012404_080 Hb_003938_110--Hb_012404_080 Hb_002311_260 Hb_002311_260 Hb_003938_110--Hb_002311_260 Hb_009296_050 Hb_009296_050 Hb_003938_110--Hb_009296_050 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_005288_060 Hb_005288_060 Hb_000414_180--Hb_005288_060 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000454_160 Hb_000454_160 Hb_000414_180--Hb_000454_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115885 0.283746 0.0845457 0.356388 0.242112 0.223983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0505502 0.0795153 0.146378 1.56679 1.70827

CAGE analysis