Hb_009296_050

Information

Type -
Description -
Location Contig9296: 60772-66386
Sequence    

Annotation

kegg
ID cit:102610887
description uncharacterized LOC102610887
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B8B5X3
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25921 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_050 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_065500_010 0.1815742799 - - -
3 Hb_004319_060 0.1909091474 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_003938_110 0.1999112846 - - polyprotein [Ananas comosus]
5 Hb_012404_080 0.2033220773 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
6 Hb_012788_010 0.2040675479 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_121992_010 0.2114480369 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
8 Hb_000141_010 0.2122295678 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
9 Hb_001485_010 0.2148477997 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_000454_160 0.2158581325 - - amidophosphoribosyltransferase, putative [Ricinus communis]
11 Hb_001304_130 0.219081968 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
12 Hb_002291_020 0.2195359881 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
13 Hb_060658_010 0.22008041 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_011853_010 0.2202371197 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
15 Hb_000840_040 0.223283558 - - monoxygenase, putative [Ricinus communis]
16 Hb_000875_070 0.2237412989 - - -
17 Hb_006700_040 0.2281631474 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
18 Hb_007546_030 0.2287512308 - - transcription cofactor, putative [Ricinus communis]
19 Hb_001677_230 0.2301490595 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_012760_110 0.2308695275 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009296_050 Hb_009296_050 Hb_065500_010 Hb_065500_010 Hb_009296_050--Hb_065500_010 Hb_004319_060 Hb_004319_060 Hb_009296_050--Hb_004319_060 Hb_003938_110 Hb_003938_110 Hb_009296_050--Hb_003938_110 Hb_012404_080 Hb_012404_080 Hb_009296_050--Hb_012404_080 Hb_012788_010 Hb_012788_010 Hb_009296_050--Hb_012788_010 Hb_121992_010 Hb_121992_010 Hb_009296_050--Hb_121992_010 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010 Hb_000879_030 Hb_000879_030 Hb_004319_060--Hb_000879_030 Hb_000032_020 Hb_000032_020 Hb_004319_060--Hb_000032_020 Hb_011609_210 Hb_011609_210 Hb_004319_060--Hb_011609_210 Hb_002110_110 Hb_002110_110 Hb_004319_060--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_004319_060--Hb_000221_180 Hb_005542_010 Hb_005542_010 Hb_004319_060--Hb_005542_010 Hb_000875_070 Hb_000875_070 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_003938_110--Hb_012404_080 Hb_002311_260 Hb_002311_260 Hb_003938_110--Hb_002311_260 Hb_044380_020 Hb_044380_020 Hb_003938_110--Hb_044380_020 Hb_012404_080--Hb_011609_210 Hb_000454_160 Hb_000454_160 Hb_012404_080--Hb_000454_160 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_000977_150 Hb_000977_150 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_012788_010--Hb_121992_010 Hb_136880_010 Hb_136880_010 Hb_012788_010--Hb_136880_010 Hb_001304_130 Hb_001304_130 Hb_012788_010--Hb_001304_130 Hb_001485_010 Hb_001485_010 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_053125_010 Hb_053125_010 Hb_012788_010--Hb_053125_010 Hb_121992_010--Hb_001304_130 Hb_121992_010--Hb_136880_010 Hb_147218_010 Hb_147218_010 Hb_121992_010--Hb_147218_010 Hb_086336_010 Hb_086336_010 Hb_121992_010--Hb_086336_010 Hb_121992_010--Hb_001485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.362396 0.0136691 0.181145 0.035503 0.0547359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0418214 0.0328968 0.122232 0.435086 0.54387

CAGE analysis