Hb_136880_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig136880: 1451-4363
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O64789
description Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136880_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_121992_010 0.1215304785 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
3 Hb_001485_010 0.1467228034 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
4 Hb_012788_010 0.1676744728 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001304_130 0.1737855134 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
6 Hb_000383_020 0.1807171808 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_151706_010 0.1809168648 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
8 Hb_000233_100 0.1827800083 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_053125_010 0.1850942803 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
10 Hb_002918_020 0.188189662 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
11 Hb_163658_010 0.19086017 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_001373_010 0.1927394111 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_010261_030 0.1950181772 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_002078_090 0.1962139192 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002003_040 0.1973899425 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_102011_010 0.2023743249 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_147218_010 0.2027001928 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_001410_010 0.2028614471 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
19 Hb_062229_010 0.2058461226 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_038862_010 0.2065648214 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_136880_010 Hb_136880_010 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_001485_010 Hb_001485_010 Hb_136880_010--Hb_001485_010 Hb_012788_010 Hb_012788_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_151706_010 Hb_151706_010 Hb_136880_010--Hb_151706_010 Hb_121992_010--Hb_001304_130 Hb_121992_010--Hb_012788_010 Hb_147218_010 Hb_147218_010 Hb_121992_010--Hb_147218_010 Hb_086336_010 Hb_086336_010 Hb_121992_010--Hb_086336_010 Hb_121992_010--Hb_001485_010 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_053125_010 Hb_053125_010 Hb_001485_010--Hb_053125_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010 Hb_012788_010--Hb_001304_130 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_012788_010--Hb_053125_010 Hb_001304_130--Hb_147218_010 Hb_000875_070 Hb_000875_070 Hb_001304_130--Hb_000875_070 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001486_060 Hb_001486_060 Hb_001304_130--Hb_001486_060 Hb_007320_020 Hb_007320_020 Hb_000383_020--Hb_007320_020 Hb_001971_020 Hb_001971_020 Hb_000383_020--Hb_001971_020 Hb_002003_040 Hb_002003_040 Hb_000383_020--Hb_002003_040 Hb_043939_010 Hb_043939_010 Hb_000383_020--Hb_043939_010 Hb_000264_340 Hb_000264_340 Hb_000383_020--Hb_000264_340 Hb_005016_120 Hb_005016_120 Hb_000383_020--Hb_005016_120 Hb_002119_070 Hb_002119_070 Hb_151706_010--Hb_002119_070 Hb_004316_030 Hb_004316_030 Hb_151706_010--Hb_004316_030 Hb_151706_010--Hb_053125_010 Hb_117168_010 Hb_117168_010 Hb_151706_010--Hb_117168_010 Hb_000977_010 Hb_000977_010 Hb_151706_010--Hb_000977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.287596 3.19578 0.313158 1.42174 0.137497 1.20574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0179566 0.272336 3.15077 2.80737

CAGE analysis