Hb_001485_010

Information

Type -
Description -
Location Contig1485: 42-6075
Sequence    

Annotation

kegg
ID pop:POPTR_0005s063002
description POPTRDRAFT_558400; hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H474
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s063002g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001485_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_102011_010 0.1091481271 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_053125_010 0.142317811 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
4 Hb_136880_010 0.1467228034 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_071160_010 0.1624481496 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_000233_100 0.166330597 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_065500_010 0.1727140603 - - -
8 Hb_012788_010 0.1795102729 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_001091_020 0.1847218774 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_010261_030 0.1853072095 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_121992_010 0.1934768757 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
12 Hb_001373_010 0.1966991472 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_000141_010 0.1972516823 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
14 Hb_057079_020 0.1975021546 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002218_070 0.2023687693 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
16 Hb_013749_060 0.2032482385 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
17 Hb_001410_010 0.2048359848 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
18 Hb_117168_010 0.2093514625 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_151706_010 0.2105676942 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
20 Hb_000383_020 0.2142161146 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001485_010 Hb_001485_010 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_053125_010 Hb_053125_010 Hb_001485_010--Hb_053125_010 Hb_136880_010 Hb_136880_010 Hb_001485_010--Hb_136880_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010 Hb_102011_010--Hb_053125_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_151706_010 Hb_151706_010 Hb_053125_010--Hb_151706_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_053125_010--Hb_065500_010 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_136880_010--Hb_151706_010 Hb_071160_010--Hb_000233_100 Hb_071160_010--Hb_001091_020 Hb_010261_030 Hb_010261_030 Hb_071160_010--Hb_010261_030 Hb_007709_010 Hb_007709_010 Hb_071160_010--Hb_007709_010 Hb_002218_070 Hb_002218_070 Hb_071160_010--Hb_002218_070 Hb_060909_010 Hb_060909_010 Hb_000233_100--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_002475_130 Hb_002475_130 Hb_000233_100--Hb_002475_130 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_065500_010--Hb_001410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.084585 1.48127 0.0509335 0.363281 0.168731 0.270564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0380162 0 0.133799 1.5059 1.06616

CAGE analysis