Hb_167977_010

Information

Type -
Description -
Location Contig167977: 636-1042
Sequence    

Annotation

kegg
ID pop:POPTR_0185s002102
description hypothetical protein
nr
ID XP_006388441.1
description hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DWJ4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0185s002102g PE=4 SV=1
Gene Ontology
ID GO:0000166
description phosphoprotein phosphatase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167977_010 0.0 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
2 Hb_053125_010 0.1628311922 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
3 Hb_065500_010 0.2074746993 - - -
4 Hb_012788_010 0.2141163014 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001485_010 0.2167299818 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_113203_010 0.2189990467 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_102011_010 0.2239939218 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_147218_010 0.2278425306 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_006916_190 0.2290065069 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_003097_050 0.2361553472 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
11 Hb_134279_010 0.2401961853 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
12 Hb_121992_010 0.2427255883 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
13 Hb_001304_130 0.2462400182 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
14 Hb_162280_010 0.2463374884 - - Phosphoprotein phosphatase isoform 2, partial [Theobroma cacao]
15 Hb_003805_060 0.2469205873 - - protein binding protein, putative [Ricinus communis]
16 Hb_000679_210 0.24859126 - - grr1, plant, putative [Ricinus communis]
17 Hb_086336_010 0.2500492866 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_151706_010 0.2510392373 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
19 Hb_005217_040 0.255359141 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
20 Hb_000512_030 0.2558904361 - - wall-associated kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_167977_010 Hb_167977_010 Hb_053125_010 Hb_053125_010 Hb_167977_010--Hb_053125_010 Hb_065500_010 Hb_065500_010 Hb_167977_010--Hb_065500_010 Hb_012788_010 Hb_012788_010 Hb_167977_010--Hb_012788_010 Hb_001485_010 Hb_001485_010 Hb_167977_010--Hb_001485_010 Hb_113203_010 Hb_113203_010 Hb_167977_010--Hb_113203_010 Hb_102011_010 Hb_102011_010 Hb_167977_010--Hb_102011_010 Hb_053125_010--Hb_001485_010 Hb_053125_010--Hb_102011_010 Hb_151706_010 Hb_151706_010 Hb_053125_010--Hb_151706_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_053125_010--Hb_065500_010 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010 Hb_121992_010 Hb_121992_010 Hb_012788_010--Hb_121992_010 Hb_136880_010 Hb_136880_010 Hb_012788_010--Hb_136880_010 Hb_001304_130 Hb_001304_130 Hb_012788_010--Hb_001304_130 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_012788_010--Hb_053125_010 Hb_001485_010--Hb_102011_010 Hb_001485_010--Hb_136880_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_001485_010--Hb_065500_010 Hb_113203_010--Hb_134279_010 Hb_113203_010--Hb_000233_100 Hb_000107_560 Hb_000107_560 Hb_113203_010--Hb_000107_560 Hb_000105_030 Hb_000105_030 Hb_113203_010--Hb_000105_030 Hb_000679_210 Hb_000679_210 Hb_113203_010--Hb_000679_210 Hb_000105_020 Hb_000105_020 Hb_113203_010--Hb_000105_020 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_102011_010--Hb_012788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10602 4.3949 0.0638531 2.82216 3.00363 1.42518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.70557 7.56679 4.8185

CAGE analysis