Hb_000032_020

Information

Type -
Description -
Location Contig32: 14563-29689
Sequence    

Annotation

kegg
ID rcu:RCOM_1691110
description Centromeric protein E, putative
nr
ID XP_002509929.1
description Centromeric protein E, putative [Ricinus communis]
swissprot
ID Q9LUI2
description Protein NETWORKED 1A OS=Arabidopsis thaliana GN=NET1A PE=1 SV=1
trembl
ID B9RCP5
description Centromeric protein E, putative OS=Ricinus communis GN=RCOM_1691110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33679: 22757-25403 , PASA_asmbl_33683: 26657-27888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_020 0.0 - - Centromeric protein E, putative [Ricinus communis]
2 Hb_000879_030 0.0838166936 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
3 Hb_002110_110 0.111309878 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_000221_180 0.1238346607 - - VQ motif-containing family protein [Populus trichocarpa]
5 Hb_073973_020 0.1317025226 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
6 Hb_000175_270 0.1350046982 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
7 Hb_005542_010 0.1407464573 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
8 Hb_014006_010 0.1446324209 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
9 Hb_000406_190 0.144927515 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_004605_020 0.1514064491 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
11 Hb_000417_410 0.1520705543 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
12 Hb_002217_070 0.1540805214 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
13 Hb_001496_120 0.1558147893 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
14 Hb_061908_020 0.1571364693 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_010921_020 0.1573854652 - - PREDICTED: cyclin-SDS [Jatropha curcas]
16 Hb_000365_220 0.1573946546 - - protein phosphatase-1, putative [Ricinus communis]
17 Hb_042463_060 0.1588372007 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004319_060 0.158894789 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_187005_010 0.1659864495 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
20 Hb_002395_020 0.166146049 - - Protein CREG1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_020 Hb_000032_020 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_002110_110 Hb_002110_110 Hb_000032_020--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_000879_030--Hb_002110_110 Hb_000879_030--Hb_005542_010 Hb_004319_060 Hb_004319_060 Hb_000879_030--Hb_004319_060 Hb_000406_190 Hb_000406_190 Hb_000879_030--Hb_000406_190 Hb_000879_030--Hb_000221_180 Hb_002110_110--Hb_005542_010 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_073973_020--Hb_001307_200 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_073973_020--Hb_001496_120 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_005542_010--Hb_010565_030 Hb_005542_010--Hb_011472_050 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.891846 10.3888 3.74073 2.00076 0.621456 0.857801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426036 0.453365 0.884459 5.85136 9.81244

CAGE analysis