Hb_003805_070

Information

Type -
Description -
Location Contig3805: 112243-130511
Sequence    

Annotation

kegg
ID rcu:RCOM_0599950
description protein binding protein, putative
nr
ID XP_012065808.1
description PREDICTED: sacsin [Jatropha curcas]
swissprot
ID Q9JLC8
description Sacsin OS=Mus musculus GN=Sacs PE=1 SV=2
trembl
ID B9SMC2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0599950 PE=4 SV=1
Gene Ontology
ID GO:0009506
description low quality protein: sacsin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38583: 112512-117156 , PASA_asmbl_38584: 117161-117644 , PASA_asmbl_38586: 118571-120709 , PASA_asmbl_38588: 122594-122744 , PASA_asmbl_38590: 123986-124242 , PASA_asmbl_38593: 125280-125544 , PASA_asmbl_38594: 125706-126406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003805_070 0.0 - - PREDICTED: sacsin [Jatropha curcas]
2 Hb_006452_240 0.1300103827 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
3 Hb_005523_010 0.131666711 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
4 Hb_148593_010 0.1453236021 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
5 Hb_011616_020 0.1480240042 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
6 Hb_099270_030 0.1549811425 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
7 Hb_001912_080 0.1729217086 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
8 Hb_001726_050 0.1747733618 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
9 Hb_000589_380 0.1766150277 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
10 Hb_005250_030 0.1787641614 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
11 Hb_000236_450 0.1819202837 - - coated vesicle membrane protein, putative [Ricinus communis]
12 Hb_000062_450 0.1819968489 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
13 Hb_013459_010 0.1866812424 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
14 Hb_156279_010 0.1870716506 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
15 Hb_030131_030 0.1910124695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
16 Hb_011609_150 0.1912992805 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
17 Hb_000714_040 0.1916507132 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
18 Hb_010998_020 0.1928231797 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
19 Hb_007545_130 0.1928688193 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
20 Hb_012098_070 0.1960060923 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]

Gene co-expression network

sample Hb_003805_070 Hb_003805_070 Hb_006452_240 Hb_006452_240 Hb_003805_070--Hb_006452_240 Hb_005523_010 Hb_005523_010 Hb_003805_070--Hb_005523_010 Hb_148593_010 Hb_148593_010 Hb_003805_070--Hb_148593_010 Hb_011616_020 Hb_011616_020 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_001912_080 Hb_001912_080 Hb_003805_070--Hb_001912_080 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_001341_020 Hb_001341_020 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_005523_010--Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_000529_140 Hb_000529_140 Hb_005523_010--Hb_000529_140 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010 Hb_148593_010--Hb_006452_240 Hb_148593_010--Hb_001341_020 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_148593_010--Hb_011616_020 Hb_148593_010--Hb_005523_010 Hb_011616_020--Hb_005250_030 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_003632_030 Hb_003632_030 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_001726_050 Hb_001726_050 Hb_099270_030--Hb_001726_050 Hb_005348_010 Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_012098_070 Hb_012098_070 Hb_099270_030--Hb_012098_070 Hb_099270_030--Hb_156279_010 Hb_005488_170 Hb_005488_170 Hb_099270_030--Hb_005488_170 Hb_000714_040 Hb_000714_040 Hb_099270_030--Hb_000714_040 Hb_000959_090 Hb_000959_090 Hb_001912_080--Hb_000959_090 Hb_001912_080--Hb_000062_450 Hb_000136_040 Hb_000136_040 Hb_001912_080--Hb_000136_040 Hb_009270_010 Hb_009270_010 Hb_001912_080--Hb_009270_010 Hb_003206_020 Hb_003206_020 Hb_001912_080--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001912_080--Hb_020665_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.650351 2.02609 0.238394 0.699117 1.53703 1.89051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256224 0.223266 1.35792 2.50432 5.66793

CAGE analysis