Hb_000959_090

Information

Type -
Description -
Location Contig959: 52010-55123
Sequence    

Annotation

kegg
ID rcu:RCOM_0075340
description hypothetical protein
nr
ID XP_002530251.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SW82
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0075340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63632: 33339-52643 , PASA_asmbl_63637: 53251-54629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001912_080 0.1079479546 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
3 Hb_000136_040 0.1457484189 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
4 Hb_001780_090 0.1633436098 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
5 Hb_000032_470 0.1767954899 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
6 Hb_007101_200 0.177084556 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
7 Hb_003206_020 0.1793370338 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
8 Hb_172970_010 0.1841466238 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
9 Hb_009270_010 0.1881786645 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
10 Hb_004137_060 0.1972826131 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
11 Hb_000743_050 0.1973308339 - - unnamed protein product [Vitis vinifera]
12 Hb_010874_040 0.1985913869 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
13 Hb_000193_140 0.2017414688 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000470_080 0.20290701 - - Caldesmon, putative [Ricinus communis]
15 Hb_000544_050 0.2029415195 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
16 Hb_006295_020 0.2038145923 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
17 Hb_001027_010 0.2042520895 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
18 Hb_012180_030 0.2057203464 - - unnamed protein product [Vitis vinifera]
19 Hb_000832_130 0.2061788669 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
20 Hb_001439_140 0.206373472 - - pattern formation protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000959_090 Hb_000959_090 Hb_001912_080 Hb_001912_080 Hb_000959_090--Hb_001912_080 Hb_000136_040 Hb_000136_040 Hb_000959_090--Hb_000136_040 Hb_001780_090 Hb_001780_090 Hb_000959_090--Hb_001780_090 Hb_000032_470 Hb_000032_470 Hb_000959_090--Hb_000032_470 Hb_007101_200 Hb_007101_200 Hb_000959_090--Hb_007101_200 Hb_003206_020 Hb_003206_020 Hb_000959_090--Hb_003206_020 Hb_000062_450 Hb_000062_450 Hb_001912_080--Hb_000062_450 Hb_001912_080--Hb_000136_040 Hb_009270_010 Hb_009270_010 Hb_001912_080--Hb_009270_010 Hb_001912_080--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001912_080--Hb_020665_010 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_005701_070 Hb_005701_070 Hb_001780_090--Hb_005701_070 Hb_000574_070 Hb_000574_070 Hb_001780_090--Hb_000574_070 Hb_000540_060 Hb_000540_060 Hb_001780_090--Hb_000540_060 Hb_000158_100 Hb_000158_100 Hb_001780_090--Hb_000158_100 Hb_001780_090--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_001780_090--Hb_032631_040 Hb_002233_100 Hb_002233_100 Hb_000032_470--Hb_002233_100 Hb_064903_010 Hb_064903_010 Hb_000032_470--Hb_064903_010 Hb_001440_040 Hb_001440_040 Hb_000032_470--Hb_001440_040 Hb_048476_170 Hb_048476_170 Hb_000032_470--Hb_048476_170 Hb_014267_010 Hb_014267_010 Hb_000032_470--Hb_014267_010 Hb_000832_130 Hb_000832_130 Hb_000032_470--Hb_000832_130 Hb_007101_200--Hb_003206_020 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_003206_020--Hb_020665_010 Hb_145915_010 Hb_145915_010 Hb_003206_020--Hb_145915_010 Hb_003206_020--Hb_009270_010 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44584 5.24638 0.436766 0.93224 6.68959 10.8467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08992 0.643229 5.85553 5.54668 7.83434

CAGE analysis