Hb_001912_080

Information

Type -
Description -
Location Contig1912: 150586-169208
Sequence    

Annotation

kegg
ID rcu:RCOM_0856160
description vacuolar protein sorting-associated protein, putative
nr
ID XP_002517515.1
description vacuolar protein sorting-associated protein, putative [Ricinus communis]
swissprot
ID Q54LB8
description Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1
trembl
ID B9RUS0
description Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0856160 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar protein sorting-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19069: 146688-155500 , PASA_asmbl_19071: 157462-159749 , PASA_asmbl_19072: 160136-163804 , PASA_asmbl_19074: 163948-164529 , PASA_asmbl_19075: 164930-165577 , PASA_asmbl_19076: 165602-166482 , PASA_asmbl_19077: 166507-168517 , PASA_asmbl_19078: 168561-189488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001912_080 0.0 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
2 Hb_000959_090 0.1079479546 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000062_450 0.1431632944 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
4 Hb_000136_040 0.1477625806 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
5 Hb_009270_010 0.1493605698 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
6 Hb_003206_020 0.1595142399 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
7 Hb_020665_010 0.1696554084 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
8 Hb_003498_130 0.1698647887 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
9 Hb_001780_090 0.1716679746 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
10 Hb_003805_070 0.1729217086 - - PREDICTED: sacsin [Jatropha curcas]
11 Hb_000714_040 0.1733601687 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
12 Hb_003119_080 0.173530363 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
13 Hb_000544_050 0.1746418403 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_006295_020 0.1759359038 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
15 Hb_099270_030 0.1768356434 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
16 Hb_011609_150 0.1771807458 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
17 Hb_000446_120 0.1794083129 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
18 Hb_000032_470 0.180018999 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
19 Hb_188126_010 0.1803441571 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
20 Hb_000318_390 0.1803453393 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001912_080 Hb_001912_080 Hb_000959_090 Hb_000959_090 Hb_001912_080--Hb_000959_090 Hb_000062_450 Hb_000062_450 Hb_001912_080--Hb_000062_450 Hb_000136_040 Hb_000136_040 Hb_001912_080--Hb_000136_040 Hb_009270_010 Hb_009270_010 Hb_001912_080--Hb_009270_010 Hb_003206_020 Hb_003206_020 Hb_001912_080--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001912_080--Hb_020665_010 Hb_000959_090--Hb_000136_040 Hb_001780_090 Hb_001780_090 Hb_000959_090--Hb_001780_090 Hb_000032_470 Hb_000032_470 Hb_000959_090--Hb_000032_470 Hb_007101_200 Hb_007101_200 Hb_000959_090--Hb_007101_200 Hb_000959_090--Hb_003206_020 Hb_005801_020 Hb_005801_020 Hb_000062_450--Hb_005801_020 Hb_006909_010 Hb_006909_010 Hb_000062_450--Hb_006909_010 Hb_156279_010 Hb_156279_010 Hb_000062_450--Hb_156279_010 Hb_025193_040 Hb_025193_040 Hb_000062_450--Hb_025193_040 Hb_000815_170 Hb_000815_170 Hb_000062_450--Hb_000815_170 Hb_004143_160 Hb_004143_160 Hb_000062_450--Hb_004143_160 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_009270_010--Hb_020665_010 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_145915_010 Hb_145915_010 Hb_009270_010--Hb_145915_010 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_003206_020--Hb_020665_010 Hb_003206_020--Hb_007101_200 Hb_003206_020--Hb_145915_010 Hb_003206_020--Hb_009270_010 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060 Hb_020665_010--Hb_145915_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02429 2.21318 0.186656 0.98386 3.46268 3.79526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595569 0.636973 2.44371 3.38513 4.33044

CAGE analysis