Hb_001117_170

Information

Type -
Description -
Location Contig1117: 124315-124851
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03542: 124677-124947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_170 0.0 - - -
2 Hb_009270_010 0.0741647982 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
3 Hb_188126_010 0.1082274868 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
4 Hb_000005_190 0.1134345799 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
5 Hb_000398_120 0.1175585288 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
6 Hb_007805_010 0.1201274473 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
7 Hb_011928_020 0.122894727 - - something about silencing protein sas10, putative [Ricinus communis]
8 Hb_003294_090 0.1231825056 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000470_080 0.1280859973 - - Caldesmon, putative [Ricinus communis]
10 Hb_002095_010 0.1282210095 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
11 Hb_003498_130 0.1298533411 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
12 Hb_001529_040 0.1317901305 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
13 Hb_015175_020 0.1327193794 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
14 Hb_020665_010 0.1347954437 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
15 Hb_164898_010 0.1362065829 - - Cysteine-rich protein, putative [Theobroma cacao]
16 Hb_005271_190 0.1366434942 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000136_040 0.1386726102 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
18 Hb_001227_080 0.1387180551 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_166222_010 0.1403525888 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
20 Hb_000130_040 0.1407143183 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001117_170 Hb_001117_170 Hb_009270_010 Hb_009270_010 Hb_001117_170--Hb_009270_010 Hb_188126_010 Hb_188126_010 Hb_001117_170--Hb_188126_010 Hb_000005_190 Hb_000005_190 Hb_001117_170--Hb_000005_190 Hb_000398_120 Hb_000398_120 Hb_001117_170--Hb_000398_120 Hb_007805_010 Hb_007805_010 Hb_001117_170--Hb_007805_010 Hb_011928_020 Hb_011928_020 Hb_001117_170--Hb_011928_020 Hb_020665_010 Hb_020665_010 Hb_009270_010--Hb_020665_010 Hb_009270_010--Hb_000005_190 Hb_145915_010 Hb_145915_010 Hb_009270_010--Hb_145915_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_188126_010--Hb_000005_190 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_000661_030 Hb_000661_030 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_010710_070 Hb_010710_070 Hb_000005_190--Hb_010710_070 Hb_012733_030 Hb_012733_030 Hb_000005_190--Hb_012733_030 Hb_003544_140 Hb_003544_140 Hb_000005_190--Hb_003544_140 Hb_002095_010 Hb_002095_010 Hb_000005_190--Hb_002095_010 Hb_000207_180 Hb_000207_180 Hb_000005_190--Hb_000207_180 Hb_011310_160 Hb_011310_160 Hb_000398_120--Hb_011310_160 Hb_003294_090 Hb_003294_090 Hb_000398_120--Hb_003294_090 Hb_001529_040 Hb_001529_040 Hb_000398_120--Hb_001529_040 Hb_003253_040 Hb_003253_040 Hb_000398_120--Hb_003253_040 Hb_006660_010 Hb_006660_010 Hb_000398_120--Hb_006660_010 Hb_143629_110 Hb_143629_110 Hb_000398_120--Hb_143629_110 Hb_002551_070 Hb_002551_070 Hb_007805_010--Hb_002551_070 Hb_002974_060 Hb_002974_060 Hb_007805_010--Hb_002974_060 Hb_005679_050 Hb_005679_050 Hb_007805_010--Hb_005679_050 Hb_000470_080 Hb_000470_080 Hb_007805_010--Hb_000470_080 Hb_000236_310 Hb_000236_310 Hb_007805_010--Hb_000236_310 Hb_011928_020--Hb_001529_040 Hb_011928_020--Hb_000470_080 Hb_011928_020--Hb_000398_120 Hb_011928_020--Hb_003498_130 Hb_002631_170 Hb_002631_170 Hb_011928_020--Hb_002631_170 Hb_000071_180 Hb_000071_180 Hb_011928_020--Hb_000071_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28901 1.05406 0.735681 0.388012 1.805 2.37835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.837593 1.12821 1.93776 3.06898 2.31923

CAGE analysis